Rh1DG156500

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017507
Physical Location & Seq
Reverse (-)
32511937 .. 32513332
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG156500.1

Sequence Viewer

Length: 1056 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTGCCTCTCCTGGTTTCCAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGACCGGACTTATGACATAACCCTCAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGATCGGATGCTGTTGGGGAGGAATGCCCTGTTGCAAAGAGGAGGAAAGTGGCTGCTGATGATGAAGACACCGAGAGTGATGATGAGACCAAGAGGGGTAAGATGATGAATGACGCTGGTAATACTGTTGGAAGTGGCAGAGGAAGGGGTAGAGGCAGAGGAAGGGGGAGGAAAGCGGTTGCCGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGCTGCATGATGCTGGTAACACCATTGGAAGTGGCCGGGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGGAGGGAAGGAGATAAGTGCACCCAATGAGAAATATGAAGATGATTTGGACATTGATAAGCATGAGGACAAGCTTGATGAACCCCTTGAGTTGCTGGATGATGCAACAGAGCCTAAAGGGTCAAAGGAAAACGCTTCAGGTGGCAATAGTGCAGAAACAGCTGCTCGGAATTTTGATTTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTACATCAGCCGCTGTTCCTGTTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGTTCCTGTTCCTGTTTCTGTACCTGTTCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTTCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGAGGAGGATTATGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

351

Amino Acids

38.1

Weight (kDa)

4.95

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 30, 32, 449, 819
AclWI GGATC 2 cut(s) 283, 983
AcoI YGGCCR 2 cut(s) 535, 981
AcsI RAATTY 3 cut(s) 187, 763, 944
AcuI CTGAAG 2 cut(s) 205, 714
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 885
AfiI CCNNNNNNNGG 9 cut(s) 168, 169, 269, 833, 839, 845, 851, 857, 965
AgsI TTSAA 5 cut(s) 202, 241, 775, 787, 804
AjnI CCWGG 6 cut(s) 99, 832, 838, 844, 850, 856
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 13, 83, 667, 755
AluI AGCT 4 cut(s) 13, 83, 667, 755
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 2 cut(s) 283, 983
AlwNI CAGNNNCTG 1 cut(s) 821
AoxI GGCC 4 cut(s) 535, 563, 956, 981
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 326, 505, 755
ApoI RAATTY 3 cut(s) 187, 763, 944
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 5 cut(s) 836, 842, 848, 854, 860
AsuC2I CCSGG 1 cut(s) 539
AvaII GGWCC 5 cut(s) 836, 842, 848, 854, 860
BaeGI GKGCMC 1 cut(s) 616
BalI TGGCCA 1 cut(s) 983
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 345, 471
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 313, 492, 742
BccI CCATC 1 cut(s) 973
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 6 cut(s) 101, 834, 840, 846, 852, 858
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 269, 567, 950, 1014
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 33, 327, 506, 756, 819
BlsI GCNGC 5 cut(s) 34, 328, 507, 757, 820
Bme1390I CCNGG 7 cut(s) 101, 539, 834, 840, 846, 852, 858
Bme18I GGWCC 5 cut(s) 836, 842, 848, 854, 860
BmgT120I GGNCC 5 cut(s) 836, 842, 848, 854, 860
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 7 cut(s) 101, 539, 834, 840, 846, 852, 858
BmsI GCATC 4 cut(s) 271, 492, 502, 685
BpiI GAAGAC 2 cut(s) 345, 471
BpuEI CTTGAG 2 cut(s) 149, 701
BpuMI CCSGG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 30, 114, 538
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 9 cut(s) 168, 169, 269, 833, 839, 845, 851, 857, 965
BseBI CCWGG 6 cut(s) 101, 834, 840, 846, 852, 858
BseDI CCNNGG 3 cut(s) 30, 114, 538
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 9 cut(s) 168, 169, 269, 833, 839, 845, 851, 857, 965
BseRI GAGGAG 2 cut(s) 328, 1049
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 3 cut(s) 313, 492, 742
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 537, 565, 958, 983
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 2 cut(s) 145, 538
BslI CCNNNNNNNGG 9 cut(s) 168, 169, 269, 833, 839, 845, 851, 857, 965
BsmAI GTCTC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 4 cut(s) 537, 565, 958, 983
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 3 cut(s) 265, 275, 988
BspACI CCGC 4 cut(s) 30, 32, 449, 819
BspANI GGCC 4 cut(s) 537, 565, 958, 983
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 283, 983
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 30, 114, 538
BssMI GATC 3 cut(s) 265, 275, 988
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 6 cut(s) 101, 834, 840, 846, 852, 858
Bst4CI ACNGT 4 cut(s) 123, 207, 400, 918
Bst6I CTCTTC 2 cut(s) 538, 1026
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 563
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 267, 963
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 3 cut(s) 268, 278, 991
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 265, 275, 988
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNI CCWGG 6 cut(s) 101, 834, 840, 846, 852, 858
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 7 cut(s) 99, 537, 832, 838, 844, 850, 856
BstSFI CTRYAG 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 313, 492, 742
BstV2I GAAGAC 2 cut(s) 345, 471
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 4 cut(s) 537, 565, 958, 983
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 3 cut(s) 212, 229, 468
Cac8I GCNNGC 1 cut(s) 563
CaiI CAGNNNCTG 1 cut(s) 821
Cfr13I GGNCC 5 cut(s) 836, 842, 848, 854, 860
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 884
CviAII CATG 6 cut(s) 184, 509, 656, 938, 970, 994
CviQI GTAC 1 cut(s) 884
DpnI GATC 3 cut(s) 267, 277, 990
DpnII GATC 3 cut(s) 265, 275, 988
EaeI YGGCCR 2 cut(s) 535, 981
Eam1104I CTCTTC 2 cut(s) 538, 1026
EarI CTCTTC 2 cut(s) 538, 1026
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 5 cut(s) 836, 842, 848, 854, 860
Eco57I CTGAAG 2 cut(s) 205, 714
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 2 cut(s) 267, 963
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 6 cut(s) 99, 832, 838, 844, 850, 856
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 187, 512, 659, 941, 973, 997
FatI CATG 6 cut(s) 183, 508, 655, 937, 969, 993
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 33, 327, 506, 756, 819
FokI GGATG 3 cut(s) 80, 293, 704
Fsp4HI GCNGC 5 cut(s) 33, 327, 506, 756, 819
FspBI CTAG 4 cut(s) 269, 567, 950, 1014
GluI GCNGC 5 cut(s) 33, 327, 506, 756, 819
HaeIII GGCC 4 cut(s) 537, 565, 958, 983
HapII CCGG 2 cut(s) 145, 538
HgaI GACGC 1 cut(s) 395
Hin1II CATG 6 cut(s) 187, 512, 659, 941, 973, 997
HindIII AAGCTT 2 cut(s) 11, 665
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 2 cut(s) 145, 538
Hpy166II GTNNAC 3 cut(s) 614, 781, 921
Hpy188I TCNGA 4 cut(s) 280, 501, 591, 762
Hpy188III TCNNGA 4 cut(s) 166, 214, 238, 263
Hpy8I GTNNAC 3 cut(s) 614, 781, 921
HpyAV CCTTC 6 cut(s) 229, 235, 411, 429, 543, 595
HpyCH4III ACNGT 4 cut(s) 123, 207, 400, 918
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 9 cut(s) 55, 130, 196, 308, 508, 614, 698, 746, 997
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 6 cut(s) 187, 512, 659, 941, 973, 997
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 265, 275, 988
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 3 cut(s) 313, 492, 742
LweI GCATC 4 cut(s) 271, 492, 502, 685
MaeI CTAG 4 cut(s) 269, 567, 950, 1014
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 2 cut(s) 140, 518
MalI GATC 3 cut(s) 267, 277, 990
MboI GATC 3 cut(s) 265, 275, 988
MboII GAAGA 8 cut(s) 19, 58, 88, 350, 476, 555, 644, 1043
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 983
MluCI AATT 5 cut(s) 39, 187, 763, 944, 1006
MluNI TGGCCA 1 cut(s) 983
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 983
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 983
MseI TTAA 2 cut(s) 42, 1054
Msp20I TGGCCA 1 cut(s) 983
MspA1I CMGCKG 3 cut(s) 32, 755, 821
MspI CCGG 2 cut(s) 145, 538
MspR9I CCNGG 7 cut(s) 101, 539, 834, 840, 846, 852, 858
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 6 cut(s) 101, 834, 840, 846, 852, 858
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 752
NciI CCSGG 1 cut(s) 539
NdeII GATC 3 cut(s) 265, 275, 988
NlaIII CATG 6 cut(s) 187, 512, 659, 941, 973, 997
NlaIV GGNNCC 2 cut(s) 175, 261
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 941
PceI AGGCCT 1 cut(s) 565
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 34, 328, 507, 757, 820
PleI GAGTC 2 cut(s) 493, 504
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 504
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 6 cut(s) 99, 832, 838, 844, 850, 856
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 6 cut(s) 99, 832, 838, 844, 850, 856
PspN4I GGNNCC 2 cut(s) 175, 261
PspPI GGNCC 5 cut(s) 836, 842, 848, 854, 860
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 885
RsaNI GTAC 1 cut(s) 884
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 42, 1054
SatI GCNGC 5 cut(s) 33, 327, 506, 756, 819
Sau3AI GATC 3 cut(s) 265, 275, 988
Sau96I GGNCC 5 cut(s) 836, 842, 848, 854, 860
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 7 cut(s) 101, 539, 834, 840, 846, 852, 858
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 4 cut(s) 271, 492, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 5 cut(s) 836, 842, 848, 854, 860
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 944, 1006
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 4 cut(s) 30, 32, 449, 819
SspMI CTAG 4 cut(s) 269, 567, 950, 1014
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 7 cut(s) 99, 537, 832, 838, 844, 850, 856
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 4 cut(s) 123, 207, 400, 918
TaiI ACGT 1 cut(s) 583
TaqI TCGA 1 cut(s) 37
TasI AATT 5 cut(s) 39, 187, 763, 944, 1006
TauI GCSGC 2 cut(s) 35, 821
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 42, 1054
Tru9I TTAA 2 cut(s) 42, 1054
TscAI CASTG 3 cut(s) 212, 229, 475
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 326, 505, 755
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 8 cut(s) 200, 351, 395, 477, 645, 687, 804, 947
TspRI CASTG 3 cut(s) 212, 229, 475
VneI GTGCAC 1 cut(s) 612
VpaK11BI GGWCC 5 cut(s) 836, 842, 848, 854, 860
XagI CCTNNNNNAGG 2 cut(s) 267, 963
XapI RAATTY 3 cut(s) 187, 763, 944
XceI RCATGY 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 269, 567, 950, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.