FvH4_7g06930

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017507
Physical Location & Seq
Reverse (-)
6902603 .. 6905092
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06930.t1

Sequence Viewer

Length: 1056 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCTGCTCGAATCAAGAAGATTATGCAGACTGATGAGGATGTTGGGAAGATAGCTCTGGCTGTGCCGCTCCTGGTTTCGAAAGCCTTGGAGCTGTTTCTGCAGGATTTGTGTGACCGGACTTATGAGATTACGCTGAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTGAAGACGTTTAATGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATTTAGGGGGGTCTGATGCTGTTGGGGATGAATGTTCGGTTGCAAAGAGAAGGAAAGTGAGTGTCGATGATGAGGATACCGAGAGTGATGATGAGACCAAGAGGAGTAAGATGATGATTGATGGTGGTAATACTGTTGGAAGTGGCAGAGGAAGGGGTAGAGGTAGAGGAAGGGGGAGGAAACTAGTTGCTGATGATGAAGACACTGATACTGATGAAGAGTCCAAGGCGAGTATGATGGTGCATGATGCTGGTAACACCCCTGGAAGTGGAAGGGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGTAGGGAGGGAGATAAGTGCACCTAATGAGAAATACGAGGATGATTTGGATATTAGTAAGCACGAGGACAAGCTTGATGAACCCCTTGAGTTGCGAGATGATGCTATAGAGCCTAAAGGGTCAAAGGAAAACATTTCAGGTGCCAATAGTGCAGAAATAGCAGCTCGGAATTTTGATTTGAATGTGGACTTGAATGAAAATGAGGACTCAGCAACTACATCAGCTGCTGTTCATGGTCCTGTTCCAGCTCCTTCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTCCTGTTCCTGCTAATTTGTCTTCACAGTTTACTCCTGATATGAAGCATGTGGAATTCCTAGGTTGGCCTTTGACGGGCATGGAAACAATGGCCATTGATCCCGTGCAACTTGCCAATTTGACTAGGAAGATAGATGAGGATGAGGAAGATTATGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

352

Amino Acids

38.22

Weight (kDa)

5.03

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 1e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 2 cut(s) 30, 95
AclWI GGATC 1 cut(s) 983
AcoI YGGCCR 1 cut(s) 981
AcsI RAATTY 3 cut(s) 187, 763, 944
AcuI CTGAAG 1 cut(s) 185
AcvI CACGTG 1 cut(s) 581
AfiI CCNNNNNNNGG 3 cut(s) 269, 533, 965
AgsI TTSAA 4 cut(s) 202, 241, 775, 787
AhlI ACTAGT 1 cut(s) 448
AjnI CCWGG 2 cut(s) 99, 526
AluBI AGCT 7 cut(s) 13, 83, 121, 667, 758, 818, 842
AluI AGCT 7 cut(s) 13, 83, 121, 667, 758, 818, 842
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 1 cut(s) 983
AlwNI CAGNNNCTG 1 cut(s) 821
AoxI GGCC 3 cut(s) 563, 956, 981
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 32, 755, 818
ApoI RAATTY 3 cut(s) 187, 763, 944
AspA2I CCTAGG 1 cut(s) 949
AspS9I GGNCC 1 cut(s) 830
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 830
AvrII CCTAGG 1 cut(s) 949
BaeGI GKGCMC 1 cut(s) 616
BalI TGGCCA 1 cut(s) 983
BanI GGYRCC 1 cut(s) 734
BauI CACGAG 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 3 cut(s) 221, 471, 903
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 19, 767, 805
BccI CCATC 2 cut(s) 380, 496
BciT130I CCWGG 2 cut(s) 101, 528
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 353
BcuI ACTAGT 1 cut(s) 448
BfaI CTAG 4 cut(s) 449, 567, 950, 1014
BfmI CTRYAG 2 cut(s) 128, 699
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 4 cut(s) 33, 95, 756, 819
BlnI CCTAGG 1 cut(s) 949
BlsI GCNGC 4 cut(s) 34, 96, 757, 820
Bme1390I CCNGG 2 cut(s) 101, 528
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 3 cut(s) 175, 261, 736
BmrFI CCNGG 2 cut(s) 101, 528
BmsI GCATC 3 cut(s) 271, 502, 685
BpiI GAAGAC 3 cut(s) 221, 471, 903
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 701
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 114, 489, 526, 949
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 533, 965
BseBI CCWGG 2 cut(s) 101, 528
BseDI CCNNGG 4 cut(s) 114, 489, 526, 949
BseGI GGATG 4 cut(s) 73, 298, 640, 1036
BseLI CCNNNNNNNGG 3 cut(s) 269, 533, 965
BseMII CTCAG 1 cut(s) 816
BseRI GAGGAG 1 cut(s) 382
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 3 cut(s) 19, 767, 805
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 3 cut(s) 565, 958, 983
BshNI GGYRCC 1 cut(s) 734
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 269, 533, 965
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 3 cut(s) 565, 958, 983
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 1 cut(s) 988
BspACI CCGC 2 cut(s) 30, 95
BspANI GGCC 3 cut(s) 565, 958, 983
BspCNI CTCAG 1 cut(s) 815
BspLI GGNNCC 3 cut(s) 175, 261, 736
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 983
BspT104I TTCGAA 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 734
BspTNI GGTCTC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 97
BssECI CCNNGG 4 cut(s) 114, 489, 526, 949
BssMI GATC 1 cut(s) 988
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 3 cut(s) 114, 489, 949
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 2 cut(s) 101, 528
Bst4CI ACNGT 4 cut(s) 207, 400, 595, 918
Bst6I CTCTTC 3 cut(s) 161, 477, 538
BstBAI YACGTR 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 1 cut(s) 802
BstENI CCTNNNNNAGG 1 cut(s) 267
BstF5I GGATG 4 cut(s) 73, 298, 640, 1036
BstKTI GATC 1 cut(s) 991
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 988
BstMWI GCNNNNNNNGC 3 cut(s) 127, 743, 752
BstNI CCWGG 2 cut(s) 101, 528
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 99, 526
BstSFI CTRYAG 2 cut(s) 128, 699
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 3 cut(s) 19, 767, 805
BstV2I GAAGAC 3 cut(s) 221, 471, 903
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 565, 958, 983
BtsCI GGATG 4 cut(s) 73, 298, 640, 1036
BtsIMutI CAGTG 2 cut(s) 212, 468
Cac8I GCNNGC 1 cut(s) 563
CaiI CAGNNNCTG 1 cut(s) 821
Cfr13I GGNCC 1 cut(s) 830
CviAII CATG 5 cut(s) 184, 509, 827, 938, 970
DdeI CTNAG 1 cut(s) 802
DpnI GATC 1 cut(s) 990
DpnII GATC 1 cut(s) 988
EaeI YGGCCR 1 cut(s) 981
Eam1104I CTCTTC 3 cut(s) 161, 477, 538
EarI CTCTTC 3 cut(s) 161, 477, 538
Eco130I CCWWGG 3 cut(s) 114, 489, 949
Eco147I AGGCCT 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 1 cut(s) 267
EcoRI GAATTC 2 cut(s) 187, 944
EcoRII CCWGG 2 cut(s) 99, 526
EcoT14I CCWWGG 3 cut(s) 114, 489, 949
ErhI CCWWGG 3 cut(s) 114, 489, 949
FaeI CATG 5 cut(s) 187, 512, 830, 941, 973
FatI CATG 5 cut(s) 183, 508, 826, 937, 969
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 33, 95, 756, 819
FokI GGATG 4 cut(s) 80, 305, 647, 1043
Fsp4HI GCNGC 4 cut(s) 33, 95, 756, 819
FspBI CTAG 4 cut(s) 449, 567, 950, 1014
GluI GCNGC 4 cut(s) 33, 95, 756, 819
HaeIII GGCC 3 cut(s) 565, 958, 983
HapII CCGG 1 cut(s) 145
Hin1II CATG 5 cut(s) 187, 512, 830, 941, 973
HindIII AAGCTT 2 cut(s) 11, 665
HinfI GANTC 3 cut(s) 39, 485, 800
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 614, 781, 921
Hpy188I TCNGA 3 cut(s) 280, 591, 762
Hpy188III TCNNGA 4 cut(s) 43, 238, 263, 926
Hpy8I GTNNAC 3 cut(s) 614, 781, 921
HpyAV CCTTC 7 cut(s) 235, 309, 411, 429, 531, 543, 855
HpyCH4III ACNGT 4 cut(s) 207, 400, 595, 918
HpyCH4IV ACGT 2 cut(s) 218, 580
HpyCH4V TGCA 8 cut(s) 55, 130, 196, 308, 508, 614, 746, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 743, 752
HpyF3I CTNAG 1 cut(s) 802
HpySE526I ACGT 2 cut(s) 218, 580
Hsp92II CATG 5 cut(s) 187, 512, 830, 941, 973
Kzo9I GATC 1 cut(s) 988
LmnI GCTCC 5 cut(s) 102, 118, 173, 847, 895
Lsp1109I GCAGC 3 cut(s) 19, 767, 805
LweI GCATC 3 cut(s) 271, 502, 685
MaeI CTAG 4 cut(s) 449, 567, 950, 1014
MaeII ACGT 2 cut(s) 218, 580
MaeIII GTNAC 2 cut(s) 140, 518
MalI GATC 1 cut(s) 990
MbiI CCGCTC 1 cut(s) 97
MboI GATC 1 cut(s) 988
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 983
MluCI AATT 5 cut(s) 187, 763, 904, 944, 1006
MluNI TGGCCA 1 cut(s) 983
MlyI GAGTC 2 cut(s) 494, 794
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 983
MscI TGGCCA 1 cut(s) 983
MseI TTAA 2 cut(s) 222, 1054
Msp20I TGGCCA 1 cut(s) 983
MspA1I CMGCKG 2 cut(s) 32, 818
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 101, 528
MvaI CCWGG 2 cut(s) 101, 528
MwoI GCNNNNNNNGC 3 cut(s) 127, 743, 752
NdeII GATC 1 cut(s) 988
NlaIII CATG 5 cut(s) 187, 512, 830, 941, 973
NlaIV GGNNCC 3 cut(s) 175, 261, 736
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 941
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 565
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 4 cut(s) 34, 96, 757, 820
PleI GAGTC 2 cut(s) 493, 794
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 794
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 99, 526
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 2 cut(s) 99, 526
PspN4I GGNNCC 3 cut(s) 175, 261, 736
PspPI GGNCC 1 cut(s) 830
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 818
SaqAI TTAA 2 cut(s) 222, 1054
SatI GCNGC 4 cut(s) 33, 95, 756, 819
Sau3AI GATC 1 cut(s) 988
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 2 cut(s) 494, 794
ScrFI CCNGG 2 cut(s) 101, 528
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 3 cut(s) 271, 502, 685
SfcI CTRYAG 2 cut(s) 128, 699
SfuI TTCGAA 1 cut(s) 107
SinI GGWCC 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SpeI ACTAGT 1 cut(s) 448
Sse9I AATT 5 cut(s) 187, 763, 904, 944, 1006
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 2 cut(s) 30, 95
SspMI CTAG 4 cut(s) 449, 567, 950, 1014
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 99, 526
StyI CCWWGG 3 cut(s) 114, 489, 949
TaaI ACNGT 4 cut(s) 207, 400, 595, 918
TaiI ACGT 2 cut(s) 221, 583
TaqI TCGA 3 cut(s) 37, 107, 330
TasI AATT 5 cut(s) 187, 763, 904, 944, 1006
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 222, 1054
Tru9I TTAA 2 cut(s) 222, 1054
TscAI CASTG 2 cut(s) 212, 475
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 32, 755, 818
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 8 cut(s) 200, 309, 477, 495, 687, 804, 815, 947
TspRI CASTG 2 cut(s) 212, 475
VneI GTGCAC 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 830
XagI CCTNNNNNAGG 1 cut(s) 267
XapI RAATTY 3 cut(s) 187, 763, 944
XceI RCATGY 1 cut(s) 941
XmaJI CCTAGG 1 cut(s) 949
XspI CTAG 4 cut(s) 449, 567, 950, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.