RLG00000029329

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017507
Physical Location & Seq
Forward (+)
36614921 .. 36615955
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029329

Sequence Viewer

Length: 1035 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTGCCTCTCCTGGTTTCAAAAGCCTTGGAACTTTTTCTGCAGGATTTATGTGACCGGACTTATGACATAACCCTCAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGATCGGATGCTGTTGGGGAGGAATGTCCTGTTGCAAAGAGGAGGAAGGTGACTGCTGATGATGAAGACACCGAGAGTGATGATGAGACCAAGAGGGGTAAGATGATGAATGATGCTGGTAATACTGTTGGAAGTGGCAGAGGAAAGGGTAGAGGCAGAGGAAGGGGCAGGAAAGCAGTTGCTGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGGTGCATGATGCTGGTAACACCATTGGAAGTGGCCGAGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGCAGGGAGGGAGATAAGTGCAGCTAATGAGAAATATGAAGATGATTTGGACGTTGATAAGCATGAGGACAAGCTTGATGAGCCCCTTGAGTTGCTGGATGATGCAACAGAGCATAAAGGGTTGAAGGAAAACGCTTCAGGTGGCAATAGTGCAGAAACAGCAGCTCGCAATTTTGATCTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTACATCAGCCGCTGTTCCTGTTCCTGGTCCTGTTCCTGTTCCAGCTCCTGCTCCTGTTTCTGTACCTGTTCCTGTTCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTTCTAGGTTGGCCTTTGACAGGCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGAGGAAGATTATGATGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

345

Amino Acids

37.48

Weight (kDa)

4.98

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 32, 819
AclWI GGATC 2 cut(s) 283, 962
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 2 cut(s) 187, 938
AcuI CTGAAG 2 cut(s) 205, 714
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 873
AfiI CCNNNNNNNGG 5 cut(s) 168, 169, 269, 833, 959
AgsI TTSAA 6 cut(s) 108, 202, 241, 718, 787, 804
AjnI CCWGG 2 cut(s) 99, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 6 cut(s) 13, 83, 617, 667, 758, 854
AluI AGCT 6 cut(s) 13, 83, 617, 667, 758, 854
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 283, 962
AlwNI CAGNNNCTG 3 cut(s) 455, 821, 857
AoxI GGCC 3 cut(s) 535, 563, 950
ApeKI GCWGC 2 cut(s) 614, 755
ApoI RAATTY 2 cut(s) 187, 938
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 836
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 836
BanII GRGCYC 1 cut(s) 678
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 345, 471
BbvI GCAGC 2 cut(s) 626, 767
BccI CCATC 1 cut(s) 496
BciT130I CCWGG 2 cut(s) 101, 834
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 269, 567, 944, 993
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 4 cut(s) 33, 615, 756, 819
BlsI GCNGC 4 cut(s) 34, 616, 757, 820
Bme1390I CCNGG 2 cut(s) 101, 834
Bme18I GGWCC 1 cut(s) 836
BmgT120I GGNCC 1 cut(s) 836
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 2 cut(s) 101, 834
BmsI GCATC 4 cut(s) 271, 376, 502, 685
BpiI GAAGAC 2 cut(s) 345, 471
BpuEI CTTGAG 2 cut(s) 149, 701
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 30, 114, 538
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 169, 269, 833, 959
BseBI CCWGG 2 cut(s) 101, 834
BseDI CCNNGG 3 cut(s) 30, 114, 538
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 5 cut(s) 168, 169, 269, 833, 959
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 626, 767
BsgI GTGCAG 2 cut(s) 633, 765
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 537, 565, 952
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 5 cut(s) 168, 169, 269, 833, 959
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 3 cut(s) 537, 565, 952
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 4 cut(s) 265, 275, 769, 967
BspACI CCGC 3 cut(s) 30, 32, 819
BspANI GGCC 3 cut(s) 537, 565, 952
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 283, 962
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 3 cut(s) 30, 114, 538
BssMI GATC 4 cut(s) 265, 275, 769, 967
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 101, 834
Bst4CI ACNGT 3 cut(s) 207, 400, 912
Bst6I CTCTTC 2 cut(s) 538, 1005
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 563, 760
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 267, 957
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 268, 278, 772, 970
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 265, 275, 769, 967
BstMWI GCNNNNNNNGC 2 cut(s) 673, 752
BstNI CCWGG 2 cut(s) 101, 834
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 2 cut(s) 99, 832
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 626, 767
BstV2I GAAGAC 2 cut(s) 345, 471
BsuRI GGCC 3 cut(s) 537, 565, 952
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 3 cut(s) 212, 229, 468
Cac8I GCNNGC 2 cut(s) 563, 760
CaiI CAGNNNCTG 3 cut(s) 455, 821, 857
Cfr13I GGNCC 1 cut(s) 836
Cfr42I CCGCGG 1 cut(s) 33
Csp6I GTAC 1 cut(s) 872
CviAII CATG 5 cut(s) 184, 509, 656, 932, 973
CviQI GTAC 1 cut(s) 872
DpnI GATC 4 cut(s) 267, 277, 771, 969
DpnII GATC 4 cut(s) 265, 275, 769, 967
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 538, 1005
EarI CTCTTC 2 cut(s) 538, 1005
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 205, 714
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 2 cut(s) 267, 957
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 99, 832
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 678
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 187, 512, 659, 935, 976
FatI CATG 5 cut(s) 183, 508, 655, 931, 972
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 33, 615, 756, 819
FokI GGATG 3 cut(s) 80, 293, 704
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 4 cut(s) 33, 615, 756, 819
FspBI CTAG 4 cut(s) 269, 567, 944, 993
GluI GCNGC 4 cut(s) 33, 615, 756, 819
HaeIII GGCC 3 cut(s) 537, 565, 952
HapII CCGG 1 cut(s) 145
Hin1II CATG 5 cut(s) 187, 512, 659, 935, 976
HindIII AAGCTT 2 cut(s) 11, 665
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 781, 915
Hpy188I TCNGA 4 cut(s) 280, 501, 591, 774
Hpy188III TCNNGA 4 cut(s) 166, 214, 238, 263
Hpy8I GTNNAC 2 cut(s) 781, 915
HpyAV CCTTC 6 cut(s) 229, 235, 313, 429, 543, 712
HpyCH4III ACNGT 3 cut(s) 207, 400, 912
HpyCH4IV ACGT 2 cut(s) 580, 645
HpyCH4V TGCA 9 cut(s) 55, 130, 196, 308, 508, 614, 698, 746, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 673, 752
HpySE526I ACGT 2 cut(s) 580, 645
Hsp92II CATG 5 cut(s) 187, 512, 659, 935, 976
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 4 cut(s) 265, 275, 769, 967
LmnI GCTCC 3 cut(s) 173, 859, 865
Lsp1109I GCAGC 2 cut(s) 626, 767
LweI GCATC 4 cut(s) 271, 376, 502, 685
MaeI CTAG 4 cut(s) 269, 567, 944, 993
MaeII ACGT 2 cut(s) 580, 645
MaeIII GTNAC 3 cut(s) 140, 322, 518
MalI GATC 4 cut(s) 267, 277, 771, 969
MboI GATC 4 cut(s) 265, 275, 769, 967
MboII GAAGA 9 cut(s) 19, 58, 88, 350, 476, 555, 644, 1022, 1028
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 5 cut(s) 39, 187, 763, 938, 985
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 32, 821
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 101, 834
MvaI CCWGG 2 cut(s) 101, 834
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 673, 752
NdeII GATC 4 cut(s) 265, 275, 769, 967
NlaIII CATG 5 cut(s) 187, 512, 659, 935, 976
NlaIV GGNNCC 2 cut(s) 175, 261
NmeAIII GCCGAG 1 cut(s) 563
NmuCI GTSAC 2 cut(s) 140, 322
NspI RCATGY 1 cut(s) 935
PceI AGGCCT 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 4 cut(s) 34, 616, 757, 820
PleI GAGTC 2 cut(s) 493, 504
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 504
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 99, 832
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 2 cut(s) 99, 832
PspN4I GGNNCC 2 cut(s) 175, 261
PspPI GGNCC 1 cut(s) 836
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 3 cut(s) 455, 821, 857
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 33, 615, 756, 819
Sau3AI GATC 4 cut(s) 265, 275, 769, 967
Sau96I GGNCC 1 cut(s) 836
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 2 cut(s) 101, 834
SduI GDGCHC 1 cut(s) 678
SfaNI GCATC 4 cut(s) 271, 376, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 1 cut(s) 836
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 938, 985
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 3 cut(s) 30, 32, 819
SspMI CTAG 4 cut(s) 269, 567, 944, 993
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 99, 832
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 207, 400, 912
TaiI ACGT 2 cut(s) 583, 648
TaqI TCGA 1 cut(s) 37
TasI AATT 5 cut(s) 39, 187, 763, 938, 985
TauI GCSGC 2 cut(s) 35, 821
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 212, 229, 475
TseFI GTSAC 2 cut(s) 140, 322
TseI GCWGC 2 cut(s) 614, 755
Tsp45I GTSAC 2 cut(s) 140, 322
TspDTI ATGAA 7 cut(s) 200, 351, 395, 477, 645, 804, 941
TspRI CASTG 3 cut(s) 212, 229, 475
VpaK11BI GGWCC 1 cut(s) 836
XagI CCTNNNNNAGG 2 cut(s) 267, 957
XapI RAATTY 2 cut(s) 187, 938
XceI RCATGY 1 cut(s) 935
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 269, 567, 944, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.