Rroxscaffold_4G00315290

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017507
Physical Location & Seq
Forward (+)
39567688 .. 39568719
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315290.1

Sequence Viewer

Length: 1032 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTGCCTCTCCTGGTTTCGAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGACCGGACTTATGACATTACCCTCAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGATCGGATGCTGTTGGGGAGGAATGTCCTGTTGCAAAGAGGAGGAAAGTGGCTGCCGATGATGAAGACACCGAGAGTGATGATGAGACCAAGAGGGGTAAGATGACGAATGATGCTGGTAATACTGTTGGAAGTGGCAGAGGAAAGGGTAGAGGCAGAGGAAGGGGCAGGAAAGCAGTTGCTGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGGTGCATGATGCTGGTAACACCATTGGAAGTGGCCGAGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCGCGTGGTAGTCGGACAGGAGGGAGGGAGATAAGTGCAGCTAATGAGAAATATGAAGATGATTTGGACATTGATAAGCATGAGGACAAGCTTGATGAGCCCCTTGAGTTGCTGGATGATGCAACAGAGCCTAAAGGGTCAAAGGAAAACACTTCAGGTGGCAATAGTGCAGAAACAGCTGCTCGGAATTTTGATTTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTACATCAGCTGCTATTCCTGGTCCTGTTCCAGCTCCTGCCCCTGCCCCTGCCCCTGCTCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTCCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGACGAAGATTATGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

343

Amino Acids

37.31

Weight (kDa)

4.94

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 1.9e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 580
AciI CCGC 3 cut(s) 30, 32, 578
AclWI GGATC 2 cut(s) 283, 959
AcoI YGGCCR 2 cut(s) 535, 957
AcsI RAATTY 3 cut(s) 187, 763, 920
AcuI CTGAAG 2 cut(s) 205, 714
AfiI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 941
AgsI TTSAA 5 cut(s) 202, 241, 775, 787, 804
AjnI CCWGG 2 cut(s) 99, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 7 cut(s) 13, 83, 617, 667, 755, 818, 842
AluI AGCT 7 cut(s) 13, 83, 617, 667, 755, 818, 842
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 283, 959
AlwNI CAGNNNCTG 2 cut(s) 455, 845
AoxI GGCC 4 cut(s) 535, 563, 932, 957
ApeKI GCWGC 4 cut(s) 326, 614, 755, 818
ApoI RAATTY 3 cut(s) 187, 763, 920
Asp700I GAANNNNTTC 1 cut(s) 123
AspA2I CCTAGG 1 cut(s) 925
AspS9I GGNCC 1 cut(s) 830
AsuII TTCGAA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 830
AvrII CCTAGG 1 cut(s) 925
BalI TGGCCA 1 cut(s) 959
BanII GRGCYC 1 cut(s) 678
BbsI GAAGAC 3 cut(s) 345, 471, 1014
BbvI GCAGC 4 cut(s) 313, 626, 742, 805
BccI CCATC 2 cut(s) 496, 949
BciT130I CCWGG 2 cut(s) 101, 828
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 269, 567, 926, 990
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 33, 327, 615, 756, 819
BlnI CCTAGG 1 cut(s) 925
BlsI GCNGC 5 cut(s) 34, 328, 616, 757, 820
Bme1390I CCNGG 2 cut(s) 101, 828
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 2 cut(s) 101, 828
BmsI GCATC 4 cut(s) 271, 376, 502, 685
BpiI GAAGAC 3 cut(s) 345, 471, 1014
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 149, 701
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 30, 114, 538, 925
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 169, 269, 941
BseBI CCWGG 2 cut(s) 101, 828
BseDI CCNNGG 4 cut(s) 30, 114, 538, 925
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 941
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 4 cut(s) 313, 626, 742, 805
BsgI GTGCAG 2 cut(s) 633, 765
Bsh1236I CGCG 2 cut(s) 32, 580
BshFI GGCC 4 cut(s) 537, 565, 934, 959
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 941
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 4 cut(s) 537, 565, 934, 959
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 265, 275, 964
BspACI CCGC 3 cut(s) 30, 32, 578
BspANI GGCC 4 cut(s) 537, 565, 934, 959
BspFNI CGCG 2 cut(s) 32, 580
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 283, 959
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 30, 114, 538, 925
BssMI GATC 3 cut(s) 265, 275, 964
BssT1I CCWWGG 2 cut(s) 114, 925
Bst2UI CCWGG 2 cut(s) 101, 828
Bst4CI ACNGT 4 cut(s) 123, 207, 400, 894
Bst6I CTCTTC 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 563, 578
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 267, 939
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 2 cut(s) 32, 580
BstKTI GATC 3 cut(s) 268, 278, 967
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 265, 275, 964
BstMWI GCNNNNNNNGC 2 cut(s) 673, 752
BstNI CCWGG 2 cut(s) 101, 828
BstNSI RCATGY 1 cut(s) 917
BstSCI CCNGG 2 cut(s) 99, 826
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 2 cut(s) 32, 580
BstV1I GCAGC 4 cut(s) 313, 626, 742, 805
BstV2I GAAGAC 3 cut(s) 345, 471, 1014
BsuRI GGCC 4 cut(s) 537, 565, 934, 959
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 3 cut(s) 212, 229, 468
Cac8I GCNNGC 2 cut(s) 563, 578
CaiI CAGNNNCTG 2 cut(s) 455, 845
Cfr13I GGNCC 1 cut(s) 830
Cfr42I CCGCGG 1 cut(s) 33
CviAII CATG 6 cut(s) 184, 509, 656, 914, 946, 970
DpnI GATC 3 cut(s) 267, 277, 966
DpnII GATC 3 cut(s) 265, 275, 964
EaeI YGGCCR 2 cut(s) 535, 957
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 114, 925
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 2 cut(s) 205, 714
EcoNI CCTNNNNNAGG 2 cut(s) 267, 939
EcoRI GAATTC 2 cut(s) 187, 920
EcoRII CCWGG 2 cut(s) 99, 826
EcoT14I CCWWGG 2 cut(s) 114, 925
EcoT38I GRGCYC 1 cut(s) 678
ErhI CCWWGG 2 cut(s) 114, 925
FaeI CATG 6 cut(s) 187, 512, 659, 917, 949, 973
FatI CATG 6 cut(s) 183, 508, 655, 913, 945, 969
FauI CCCGC 2 cut(s) 37, 585
Fnu4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FokI GGATG 3 cut(s) 80, 293, 704
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FspBI CTAG 4 cut(s) 269, 567, 926, 990
GluI GCNGC 5 cut(s) 33, 327, 615, 756, 819
HaeIII GGCC 4 cut(s) 537, 565, 934, 959
HapII CCGG 1 cut(s) 145
Hin1II CATG 6 cut(s) 187, 512, 659, 917, 949, 973
HindIII AAGCTT 2 cut(s) 11, 665
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 781, 897
Hpy188I TCNGA 4 cut(s) 280, 501, 591, 762
Hpy188III TCNNGA 4 cut(s) 166, 214, 238, 263
Hpy8I GTNNAC 2 cut(s) 781, 897
HpyAV CCTTC 4 cut(s) 229, 235, 429, 543
HpyCH4III ACNGT 4 cut(s) 123, 207, 400, 894
HpyCH4V TGCA 9 cut(s) 55, 130, 196, 308, 508, 614, 698, 746, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 673, 752
Hsp92II CATG 6 cut(s) 187, 512, 659, 917, 949, 973
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 265, 275, 964
LmnI GCTCC 3 cut(s) 173, 847, 871
Lsp1109I GCAGC 4 cut(s) 313, 626, 742, 805
LweI GCATC 4 cut(s) 271, 376, 502, 685
MaeI CTAG 4 cut(s) 269, 567, 926, 990
MaeIII GTNAC 2 cut(s) 140, 518
MalI GATC 3 cut(s) 267, 277, 966
MboI GATC 3 cut(s) 265, 275, 964
MboII GAAGA 9 cut(s) 19, 58, 88, 350, 476, 555, 644, 1019, 1025
MhlI GDGCHC 1 cut(s) 678
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 5 cut(s) 39, 187, 763, 920, 982
MluNI TGGCCA 1 cut(s) 959
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 959
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 959
MseI TTAA 2 cut(s) 42, 1030
Msp20I TGGCCA 1 cut(s) 959
MspA1I CMGCKG 3 cut(s) 32, 755, 818
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 101, 828
MvaI CCWGG 2 cut(s) 101, 828
MvnI CGCG 2 cut(s) 32, 580
MwoI GCNNNNNNNGC 2 cut(s) 673, 752
NdeII GATC 3 cut(s) 265, 275, 964
NlaIII CATG 6 cut(s) 187, 512, 659, 917, 949, 973
NlaIV GGNNCC 2 cut(s) 175, 261
NmeAIII GCCGAG 1 cut(s) 563
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 917
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 34, 328, 616, 757, 820
PleI GAGTC 2 cut(s) 493, 504
PpsI GAGTC 2 cut(s) 493, 504
Psp6I CCWGG 2 cut(s) 99, 826
PspGI CCWGG 2 cut(s) 99, 826
PspN4I GGNNCC 2 cut(s) 175, 261
PspPI GGNCC 1 cut(s) 830
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 2 cut(s) 455, 845
PvuII CAGCTG 2 cut(s) 755, 818
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 42, 1030
SatI GCNGC 5 cut(s) 33, 327, 615, 756, 819
Sau3AI GATC 3 cut(s) 265, 275, 964
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 2 cut(s) 101, 828
SduI GDGCHC 1 cut(s) 678
SfaNI GCATC 4 cut(s) 271, 376, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 1 cut(s) 830
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 920, 982
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 3 cut(s) 30, 32, 578
SspMI CTAG 4 cut(s) 269, 567, 926, 990
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 99, 826
StyI CCWWGG 2 cut(s) 114, 925
TaaI ACNGT 4 cut(s) 123, 207, 400, 894
TaqI TCGA 2 cut(s) 37, 107
TasI AATT 5 cut(s) 39, 187, 763, 920, 982
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 42, 1030
Tru9I TTAA 2 cut(s) 42, 1030
TscAI CASTG 3 cut(s) 212, 229, 475
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 4 cut(s) 326, 614, 755, 818
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 6 cut(s) 200, 351, 477, 645, 804, 923
TspRI CASTG 3 cut(s) 212, 229, 475
VpaK11BI GGWCC 1 cut(s) 830
XagI CCTNNNNNAGG 2 cut(s) 267, 939
XapI RAATTY 3 cut(s) 187, 763, 920
XceI RCATGY 1 cut(s) 917
XmaJI CCTAGG 1 cut(s) 925
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 269, 567, 926, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.