Rh1CG140400

Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017507
Physical Location & Seq
Reverse (-)
30600554 .. 30604843
4290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG140400.1

Sequence Viewer

Length: 1044 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATAGCTTTGGCTGTGCCTCTCCTGGTTTCCAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGACCGGACTTATGACATAACCCTCAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGATCGGATGCTGTTGGGGAGGAATGTCCTGTTGCAAAGAGGAGGAAAGTGGCTGCTGATGATGAAGACACCGAGAGTGACGATGAGACCAAGAGGGGTAAGATGATGAATGACGCTGGTAATACTGTTGGAAGTGGCAGAGGAAGGGGTAGAGGCAGAGGAAGGGGGAGGAAAGCGGTTGCCGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGGTGCATGATGCTGGTAACACCATTGGAAGTGGCCGGGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGTAGTCGGACAGCAGGGAGGGAGATAAGTGCAGCTAATGAGAAATATGAAGATGATTTGGACATTGATAAGCATGAGGACAAGCTCGATGAACCCCTTGAGTTGCTGGATGATGCAACAGAGCCTAAAGGGTCAAAGGAAAACGCTTCAGGTGACAATAGTGCAGAAACAGCTGCTCGGAATTTTGATTTGAATGTGGACTTGAATGAAAATGAGGATTCAACAACTACATCAGCTGCTATTCCTGGTCCTGTTCCAGCTCCTGCCCCTGCCCCTGCCCCTGTTCCTGTTCCTGATCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTCCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGATGAAGATTATGATGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

347

Amino Acids

37.85

Weight (kDa)

4.86

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19490
fragaria_vesca FvH4_7g06930
rosa_chinensis RchiOBHm_Chr1g0336861
rosa_laevigata RLG00000029329
rosa_multiflora Rmu_sc0004920.1_g000001
rosa_roxburghii Rroxscaffold_4G00315290
rosa_rugosa Rorug01G0128400
rosa_samantha Rh1AG149200 Rh1BG117300 Rh1CG140400 Rh1DG156500
rosa_wichuraiana Rw1G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 3 cut(s) 30, 32, 449
AclWI GGATC 3 cut(s) 283, 872, 971
AcoI YGGCCR 2 cut(s) 535, 969
AcsI RAATTY 3 cut(s) 187, 763, 932
AcuI CTGAAG 2 cut(s) 205, 714
AcvI CACGTG 1 cut(s) 581
AfiI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 953
AgsI TTSAA 5 cut(s) 202, 241, 775, 787, 804
AjnI CCWGG 2 cut(s) 99, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 7 cut(s) 13, 83, 617, 667, 755, 818, 842
AluI AGCT 7 cut(s) 13, 83, 617, 667, 755, 818, 842
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 3 cut(s) 283, 872, 971
AlwNI CAGNNNCTG 1 cut(s) 845
AoxI GGCC 4 cut(s) 535, 563, 944, 969
ApeKI GCWGC 4 cut(s) 326, 614, 755, 818
ApoI RAATTY 3 cut(s) 187, 763, 932
Asp700I GAANNNNTTC 1 cut(s) 123
AspA2I CCTAGG 1 cut(s) 937
AspS9I GGNCC 1 cut(s) 830
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 746
AvaII GGWCC 1 cut(s) 830
AvrII CCTAGG 1 cut(s) 937
BalI TGGCCA 1 cut(s) 971
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 2 cut(s) 345, 471
BbvI GCAGC 4 cut(s) 313, 626, 742, 805
BccI CCATC 2 cut(s) 496, 961
BciT130I CCWGG 2 cut(s) 101, 828
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 269, 567, 938, 1002
BfmI CTRYAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 33, 327, 615, 756, 819
BlnI CCTAGG 1 cut(s) 937
BlsI GCNGC 5 cut(s) 34, 328, 616, 757, 820
Bme1390I CCNGG 3 cut(s) 101, 539, 828
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 3 cut(s) 101, 539, 828
BmsI GCATC 3 cut(s) 271, 502, 685
BpiI GAAGAC 2 cut(s) 345, 471
BpuEI CTTGAG 2 cut(s) 149, 701
BpuMI CCSGG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 30, 114, 538, 937
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 169, 269, 953
BseBI CCWGG 2 cut(s) 101, 828
BseDI CCNNGG 4 cut(s) 30, 114, 538, 937
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 953
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 4 cut(s) 313, 626, 742, 805
BsgI GTGCAG 2 cut(s) 633, 765
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 537, 565, 946, 971
BsiSI CCGG 2 cut(s) 145, 538
BslI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 953
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 4 cut(s) 537, 565, 946, 971
Bso31I GGTCTC 1 cut(s) 353
Bsp143I GATC 4 cut(s) 265, 275, 877, 976
BspACI CCGC 3 cut(s) 30, 32, 449
BspANI GGCC 4 cut(s) 537, 565, 946, 971
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 3 cut(s) 283, 872, 971
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 30, 114, 538, 937
BssMI GATC 4 cut(s) 265, 275, 877, 976
BssT1I CCWWGG 2 cut(s) 114, 937
Bst2UI CCWGG 2 cut(s) 101, 828
Bst4CI ACNGT 4 cut(s) 123, 207, 400, 906
Bst6I CTCTTC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 563
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 267, 951
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 4 cut(s) 268, 278, 880, 979
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 265, 275, 877, 976
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNI CCWGG 2 cut(s) 101, 828
BstNSI RCATGY 1 cut(s) 929
BstSCI CCNGG 3 cut(s) 99, 537, 826
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 4 cut(s) 313, 626, 742, 805
BstV2I GAAGAC 2 cut(s) 345, 471
BstXI CCANNNNNNTGG 1 cut(s) 115
BsuRI GGCC 4 cut(s) 537, 565, 946, 971
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 3 cut(s) 212, 229, 468
Cac8I GCNNGC 1 cut(s) 563
CaiI CAGNNNCTG 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 830
Cfr42I CCGCGG 1 cut(s) 33
CseI GACGC 1 cut(s) 395
CviAII CATG 6 cut(s) 184, 509, 656, 926, 958, 982
DpnI GATC 4 cut(s) 267, 277, 879, 978
DpnII GATC 4 cut(s) 265, 275, 877, 976
EaeI YGGCCR 2 cut(s) 535, 969
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 114, 937
Eco147I AGGCCT 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 2 cut(s) 205, 714
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 2 cut(s) 267, 951
EcoRI GAATTC 2 cut(s) 187, 932
EcoRII CCWGG 2 cut(s) 99, 826
EcoT14I CCWWGG 2 cut(s) 114, 937
ErhI CCWWGG 2 cut(s) 114, 937
FaeI CATG 6 cut(s) 187, 512, 659, 929, 961, 985
FatI CATG 6 cut(s) 183, 508, 655, 925, 957, 981
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FokI GGATG 3 cut(s) 80, 293, 704
Fsp4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FspBI CTAG 4 cut(s) 269, 567, 938, 1002
GluI GCNGC 5 cut(s) 33, 327, 615, 756, 819
HaeIII GGCC 4 cut(s) 537, 565, 946, 971
HapII CCGG 2 cut(s) 145, 538
HgaI GACGC 1 cut(s) 395
Hin1II CATG 6 cut(s) 187, 512, 659, 929, 961, 985
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 2 cut(s) 145, 538
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 2 cut(s) 781, 909
Hpy188I TCNGA 4 cut(s) 280, 501, 591, 762
Hpy188III TCNNGA 5 cut(s) 166, 214, 238, 263, 875
Hpy8I GTNNAC 2 cut(s) 781, 909
HpyAV CCTTC 5 cut(s) 229, 235, 411, 429, 543
HpyCH4III ACNGT 4 cut(s) 123, 207, 400, 906
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 9 cut(s) 55, 130, 196, 308, 508, 614, 698, 746, 985
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 6 cut(s) 187, 512, 659, 929, 961, 985
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 4 cut(s) 265, 275, 877, 976
LmnI GCTCC 2 cut(s) 173, 847
Lsp1109I GCAGC 4 cut(s) 313, 626, 742, 805
LweI GCATC 3 cut(s) 271, 502, 685
MaeI CTAG 4 cut(s) 269, 567, 938, 1002
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 4 cut(s) 140, 350, 518, 734
MalI GATC 4 cut(s) 267, 277, 879, 978
MboI GATC 4 cut(s) 265, 275, 877, 976
MboII GAAGA 9 cut(s) 19, 58, 88, 350, 476, 555, 644, 1031, 1037
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 5 cut(s) 39, 187, 763, 932, 994
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 971
MseI TTAA 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 3 cut(s) 32, 755, 818
MspI CCGG 2 cut(s) 145, 538
MspR9I CCNGG 3 cut(s) 101, 539, 828
MvaI CCWGG 2 cut(s) 101, 828
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 752
NciI CCSGG 1 cut(s) 539
NdeII GATC 4 cut(s) 265, 275, 877, 976
NlaIII CATG 6 cut(s) 187, 512, 659, 929, 961, 985
NlaIV GGNNCC 2 cut(s) 175, 261
NmuCI GTSAC 3 cut(s) 140, 350, 734
NspI RCATGY 1 cut(s) 929
PceI AGGCCT 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 34, 328, 616, 757, 820
PleI GAGTC 2 cut(s) 493, 504
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 504
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 99, 826
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 2 cut(s) 99, 826
PspN4I GGNNCC 2 cut(s) 175, 261
PspPI GGNCC 1 cut(s) 830
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 845
PvuII CAGCTG 2 cut(s) 755, 818
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 5 cut(s) 33, 327, 615, 756, 819
Sau3AI GATC 4 cut(s) 265, 275, 877, 976
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 3 cut(s) 101, 539, 828
SfaNI GCATC 3 cut(s) 271, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SgrBI CCGCGG 1 cut(s) 33
SinI GGWCC 1 cut(s) 830
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 932, 994
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 3 cut(s) 30, 32, 449
SspMI CTAG 4 cut(s) 269, 567, 938, 1002
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 99, 537, 826
StyI CCWWGG 2 cut(s) 114, 937
TaaI ACNGT 4 cut(s) 123, 207, 400, 906
TaiI ACGT 1 cut(s) 583
TaqI TCGA 2 cut(s) 37, 669
TasI AATT 5 cut(s) 39, 187, 763, 932, 994
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 212, 229, 475
TseFI GTSAC 3 cut(s) 140, 350, 734
TseI GCWGC 4 cut(s) 326, 614, 755, 818
Tsp45I GTSAC 3 cut(s) 140, 350, 734
TspDTI ATGAA 9 cut(s) 200, 351, 395, 477, 645, 687, 804, 935, 1038
TspRI CASTG 3 cut(s) 212, 229, 475
VpaK11BI GGWCC 1 cut(s) 830
XagI CCTNNNNNAGG 2 cut(s) 267, 951
XapI RAATTY 3 cut(s) 187, 763, 932
XceI RCATGY 1 cut(s) 929
XmaJI CCTAGG 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 269, 567, 938, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.