AT5G19570

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015971
Physical Location & Seq
Forward (+)
6606564 .. 6607321
758 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19570.1

Sequence Viewer

Length: 414 bp
ATGAAGGAAGACATGGATAAGATGGTGGCGGTAGGGCTCGTATGGGGAGCCACCAATGCTCTGATCCGTCGTGGCGCTCTTGCCTGGGATAAAACAAAGTCTTCTTCGACAACAGAATCTCATTCTCCTCCTCTTCAGATCCGCCGCAAAATCATGATTGCTCTCCGCGACTGGATCAATCTCCTCCTCTTCTGGCAATACTCAATTCCTTTCCTCATAAACCTCTCCGCCTCCGCCACATTCTTCGCCCTTCTCAGTCACGCTCCCATCTCTCTTGCCGTTCCGGTGACTAACGCCACAACCTTTGCCGCAACCGCCGCTTTTGGGATCCTTTTAGGGGAAGAAACTCAAATCGGACTTGCTTTGTTAGGTACGAGCTTTATTGTATTTGGAATTTGGCTTTGTGTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

137

Amino Acids

14.97

Weight (kDa)

8.98

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 136 1.5e-26 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 9 cut(s) 29, 142, 145, 166, 228, 234, 309, 315, 318
AclWI GGATC 5 cut(s) 58, 133, 182, 322, 335
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 2 cut(s) 324, 337
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
AlwI GGATC 5 cut(s) 58, 133, 182, 322, 335
ApoI RAATTY 1 cut(s) 393
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 298
BamHI GGATCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 15, 93
BccI CCATC 2 cut(s) 16, 275
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 3 cut(s) 145, 309, 318
BlsI GCNGC 3 cut(s) 146, 310, 319
Bme1390I CCNGG 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 49, 329
BmrFI CCNGG 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 15, 93
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 337
Bse1I ACTGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 324, 337
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 4 cut(s) 117, 120, 173, 176
Bsh1236I CGCG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 324, 337
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 4 cut(s) 63, 138, 174, 327
BspACI CCGC 9 cut(s) 29, 142, 145, 166, 228, 234, 309, 315, 318
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 49, 329
BspPI GGATC 5 cut(s) 58, 133, 182, 322, 335
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 4 cut(s) 63, 138, 174, 327
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 138, 194
BstDEI CTNAG 1 cut(s) 254
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 66, 141, 177, 330
BstMBI GATC 4 cut(s) 63, 138, 174, 327
BstMWI GCNNNNNNNGC 3 cut(s) 56, 314, 317
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstUI CGCG 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 15, 93
BstX2I RGATCY 2 cut(s) 138, 327
BstYI RGATCY 2 cut(s) 138, 327
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 372
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 13, 154
CviJI RGCY 4 cut(s) 37, 50, 378, 400
CviKI_1 RGCY 4 cut(s) 37, 50, 378, 400
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 1 cut(s) 254
DpnI GATC 4 cut(s) 65, 140, 176, 329
DpnII GATC 4 cut(s) 63, 138, 174, 327
Eam1104I CTCTTC 2 cut(s) 138, 194
EarI CTCTTC 2 cut(s) 138, 194
EciI GGCGGA 3 cut(s) 131, 217, 223
Eco24I GRGCYC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 16, 157
FaiI YATR 4 cut(s) 14, 43, 155, 218
FatI CATG 2 cut(s) 12, 153
Fnu4HI GCNGC 3 cut(s) 145, 309, 318
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 145, 309, 318
GlaI GCGC 1 cut(s) 76
GluI GCNGC 3 cut(s) 145, 309, 318
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 16, 157
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 63, 138, 356
Hpy188III TCNNGA 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 314, 317
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 2 cut(s) 16, 157
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 4 cut(s) 63, 138, 174, 327
LmnI GCTCC 2 cut(s) 47, 268
LpnPI CCDG 5 cut(s) 70, 97, 157, 178, 297
MaeIII GTNAC 2 cut(s) 257, 286
MalI GATC 4 cut(s) 65, 140, 176, 329
MboI GATC 4 cut(s) 63, 138, 174, 327
MboII GAAGA 7 cut(s) 20, 93, 96, 125, 181, 235, 353
MflI RGATCY 2 cut(s) 138, 327
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 204, 393
MnlI CCTC 7 cut(s) 138, 141, 194, 197, 224, 233, 241
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 3 cut(s) 56, 314, 317
NdeII GATC 4 cut(s) 63, 138, 174, 327
NlaIII CATG 2 cut(s) 16, 157
NlaIV GGNNCC 2 cut(s) 49, 329
NmuCI GTSAC 2 cut(s) 257, 286
PagI TCATGA 1 cut(s) 153
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 146, 310, 319
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 49, 329
PsuI RGATCY 2 cut(s) 138, 327
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SatI GCNGC 3 cut(s) 145, 309, 318
Sau3AI GATC 4 cut(s) 63, 138, 174, 327
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 39
SetI ASST 4 cut(s) 225, 305, 373, 380
Sse9I AATT 2 cut(s) 204, 393
SsiI CCGC 9 cut(s) 29, 142, 145, 166, 228, 234, 309, 315, 318
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 107
TasI AATT 2 cut(s) 204, 393
TauI GCSGC 3 cut(s) 147, 311, 320
TfiI GAWTC 1 cut(s) 116
TseFI GTSAC 2 cut(s) 257, 286
Tsp45I GTSAC 2 cut(s) 257, 286
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.