FvH4_1g05720

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015971
Physical Location & Seq
Forward (+)
3014435 .. 3014839
405 bp
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UTR
Exon/CDS
Intron
FvH4_1g05720.t1

Sequence Viewer

Length: 405 bp
ATGGTGGGAGACGTAGAGAAGATGATCGGGGTGGGGCTAGTCTGGGGCGCCACCAACGCCCTAATGCGACGTGGCGCCCTCCTATGGGACCAAGCCCTCAAGTCCTCTTCATCGCAGCAGAACACAGCCCACGGCAATAAGCTCCTCACTTCCCTGAAAAGCTGGCTGAAGCTCCTCTCAATCTGGCAGTACACGATCCCCTTCTTCGTCAACCTCTCCGCCTCCGCCACCTTCTTCGCCATCCTCAGCCACACCCCGATCTCCCTCGCCGTCCCCGTCACCAATGCCACCACGTTCGCCGCCACCGCCGTTTTCGGGTTGCTGTTGGGGGAACAGACCCACTTGGGTTTGGCTCTGTTCGGTACGGCTTTGATTGTCTTGGGCATTTGGCTTTGTATCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

135

Amino Acids

14.36

Weight (kDa)

9.43

Isoelectric Point (pI)

20.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 133 2e-25 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 47, 74
AciI CCGC 4 cut(s) 219, 225, 300, 306
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 2 cut(s) 48, 75
AfaI GTAC 2 cut(s) 191, 364
AfiI CCNNNNNNNGG 3 cut(s) 84, 85, 315
AjiI CACGTC 1 cut(s) 71
AluBI AGCT 3 cut(s) 142, 162, 172
AluI AGCT 3 cut(s) 142, 162, 172
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 115
AspLEI GCGC 2 cut(s) 50, 77
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 88
BanI GGYRCC 2 cut(s) 47, 74
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 248
BceAI ACGGC 4 cut(s) 148, 254, 293, 381
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 2 cut(s) 51, 78
BisI GCNGC 2 cut(s) 116, 300
BlsI GCNGC 2 cut(s) 117, 301
Bme18I GGWCC 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 3 cut(s) 49, 76, 89
Bpu10I CCTNAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 83
BsaHI GRCGYC 2 cut(s) 48, 75
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 85, 315
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 3 cut(s) 84, 85, 315
BseMII CTCAG 1 cut(s) 259
BseRI GAGGAG 2 cut(s) 134, 164
BseXI GCAGC 1 cut(s) 127
BshNI GGYRCC 2 cut(s) 47, 74
BslFI GGGAC 2 cut(s) 101, 257
BslI CCNNNNNNNGG 3 cut(s) 84, 85, 315
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 101, 257
Bsp143I GATC 3 cut(s) 24, 195, 258
BspACI CCGC 4 cut(s) 219, 225, 300, 306
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 49, 76, 89
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 2 cut(s) 47, 74
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 24, 195, 258
BssNI GRCGYC 2 cut(s) 48, 75
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 2 cut(s) 48, 75
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 1 cut(s) 240
BstH2I RGCGCY 2 cut(s) 51, 78
BstHHI GCGC 2 cut(s) 50, 77
BstKTI GATC 3 cut(s) 27, 198, 261
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 3 cut(s) 24, 195, 258
BstMWI GCNNNNNNNGC 2 cut(s) 56, 305
BstV1I GCAGC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 130
BtgZI GCGATG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 164
CfoI GCGC 2 cut(s) 50, 77
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 190, 363
CviQI GTAC 2 cut(s) 190, 363
DdeI CTNAG 1 cut(s) 245
DinI GGCGCC 2 cut(s) 49, 76
DpnI GATC 3 cut(s) 26, 197, 260
DpnII GATC 3 cut(s) 24, 195, 258
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
EciI GGCGGA 2 cut(s) 208, 214
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 188
EgeI GGCGCC 2 cut(s) 49, 76
EheI GGCGCC 2 cut(s) 49, 76
Esp3I CGTCTC 1 cut(s) 3
FaiI YATR 2 cut(s) 85, 403
FaqI GGGAC 2 cut(s) 101, 257
Fnu4HI GCNGC 2 cut(s) 116, 300
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 116, 300
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 49, 76
GluI GCNGC 2 cut(s) 116, 300
HaeII RGCGCY 2 cut(s) 51, 78
HhaI GCGC 2 cut(s) 50, 77
Hin1I GRCGYC 2 cut(s) 48, 75
Hin6I GCGC 2 cut(s) 48, 75
HinP1I GCGC 2 cut(s) 48, 75
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 192, 211
Hpy8I GTNNAC 2 cut(s) 192, 211
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 211, 241
HpyCH4IV ACGT 3 cut(s) 12, 70, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 305
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 3 cut(s) 12, 70, 293
Hsp92I GRCGYC 2 cut(s) 48, 75
HspAI GCGC 2 cut(s) 48, 75
KasI GGCGCC 2 cut(s) 47, 74
Kzo9I GATC 3 cut(s) 24, 195, 258
LmnI GCTCC 2 cut(s) 147, 177
LpnPI CCDG 4 cut(s) 28, 148, 167, 169
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 38
MaeII ACGT 3 cut(s) 12, 70, 293
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 26, 197, 260
MboI GATC 3 cut(s) 24, 195, 258
MboII GAAGA 4 cut(s) 31, 99, 196, 226
Mly113I GGCGCC 2 cut(s) 48, 75
MnlI CCTC 9 cut(s) 89, 107, 115, 155, 185, 224, 232, 254, 275
MwoI GCNNNNNNNGC 2 cut(s) 56, 305
NarI GGCGCC 2 cut(s) 48, 75
NdeII GATC 3 cut(s) 24, 195, 258
NlaIV GGNNCC 3 cut(s) 49, 76, 89
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PkrI GCNGC 2 cut(s) 117, 301
PluTI GGCGCC 2 cut(s) 51, 78
PspN4I GGNNCC 3 cut(s) 49, 76, 89
PspPI GGNCC 1 cut(s) 88
RsaI GTAC 2 cut(s) 191, 364
RsaNI GTAC 2 cut(s) 190, 363
SatI GCNGC 2 cut(s) 116, 300
Sau3AI GATC 3 cut(s) 24, 195, 258
Sau96I GGNCC 1 cut(s) 88
SetI ASST 8 cut(s) 15, 73, 144, 164, 174, 216, 233, 296
SfoI GGCGCC 2 cut(s) 49, 76
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 4 cut(s) 219, 225, 300, 306
SspDI GGCGCC 2 cut(s) 47, 74
SspMI CTAG 1 cut(s) 38
TaiI ACGT 3 cut(s) 15, 73, 296
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 302
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 88
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.