pycom02g04700

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015971
Physical Location & Seq
Reverse (-)
3057087 .. 3057503
417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04700.1

Sequence Viewer

Length: 417 bp
ATGATCGGAGACGTCGAGAAGATGATCGGAGTGGGCCTCATTTGGGGGGCCACCAACGCCCTAATGCGCCGCGGCGCCCTTCTCTGGGATCAAGCCCTCAAATCCTCCTCCTCAGCCCAGGCCCGTGCCCAGCCCGGCCCAATCCACCACAAGCTTCTCGCCTCCCTCACGGGCTGGCTCAAGCTCCTCGCAATTTGGCAGTACACAGTCCCCTTCTTCGTCAACCTCTCCGCCTCCGCTACTTTCTTCGCCATACTCAGCCACACTCCGATCTCGCTCGCCGTCCCCGTCACTAATGCGACAACGTTTGCCGCCACCGCCGTGTTTGGCTTGCTCTTGGGGGAGCAGACCCACCTCGGCCTCGCTATGTTCGGTACGGCTTTGATTGTTTTGGGCATTTGGCTTTGCATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

139

Amino Acids

14.72

Weight (kDa)

9.51

Isoelectric Point (pI)

25.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 137 2.5e-24 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 72
AciI CCGC 6 cut(s) 70, 72, 231, 237, 312, 318
AclI AACGTT 1 cut(s) 305
AclWI GGATC 1 cut(s) 96
AcyI GRCGYC 2 cut(s) 12, 75
AfaI GTAC 2 cut(s) 203, 376
AfiI CCNNNNNNNGG 3 cut(s) 43, 84, 85
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 2 cut(s) 154, 184
AluI AGCT 2 cut(s) 154, 184
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 96
AoxI GGCC 5 cut(s) 34, 48, 120, 136, 358
AspLEI GCGC 2 cut(s) 69, 77
AspS9I GGNCC 4 cut(s) 34, 48, 121, 137
AsuC2I CCSGG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 112
BceAI ACGGC 3 cut(s) 266, 305, 393
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 3 cut(s) 70, 73, 312
BlsI GCNGC 3 cut(s) 71, 74, 313
Bme1390I CCNGG 2 cut(s) 119, 135
BmgT120I GGNCC 4 cut(s) 34, 48, 121, 137
BmiI GGNNCC 2 cut(s) 49, 76
BmrFI CCNGG 2 cut(s) 119, 135
BplI GAGNNNNNCTC 2 cut(s) 21, 53
Bpu10I CCTNAGC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 135
BsaHI GRCGYC 2 cut(s) 12, 75
BsaJI CCNNGG 3 cut(s) 70, 117, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 84, 85
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 70, 117, 355
BseLI CCNNNNNNNGG 3 cut(s) 43, 84, 85
BseMII CTCAG 2 cut(s) 126, 271
BseRI GAGGAG 3 cut(s) 97, 100, 176
BseSI GKGCMC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 5 cut(s) 36, 50, 122, 138, 360
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 2 cut(s) 194, 269
BslI CCNNNNNNNGG 3 cut(s) 43, 84, 85
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 194, 269
BsnI GGCC 5 cut(s) 36, 50, 122, 138, 360
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 4 cut(s) 3, 24, 88, 270
BspACI CCGC 6 cut(s) 70, 72, 231, 237, 312, 318
BspANI GGCC 5 cut(s) 36, 50, 122, 138, 360
BspCNI CTCAG 2 cut(s) 125, 270
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 49, 76
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 70, 117, 355
BssMI GATC 4 cut(s) 3, 24, 88, 270
BssNI GRCGYC 2 cut(s) 12, 75
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 2 cut(s) 12, 75
BstC8I GCNNGC 3 cut(s) 176, 279, 332
BstDEI CTNAG 2 cut(s) 112, 257
BstDSI CCRYGG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 69, 77
BstKTI GATC 4 cut(s) 6, 27, 91, 273
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 4 cut(s) 3, 24, 88, 270
BstMWI GCNNNNNNNGC 2 cut(s) 56, 317
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 117, 133
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 72
BsuRI GGCC 5 cut(s) 36, 50, 122, 138, 360
BtgI CCRYGG 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 176, 279, 332
CfoI GCGC 2 cut(s) 69, 77
Cfr13I GGNCC 4 cut(s) 34, 48, 121, 137
Cfr42I CCGCGG 1 cut(s) 73
Csp6I GTAC 2 cut(s) 202, 375
CviQI GTAC 2 cut(s) 202, 375
DdeI CTNAG 2 cut(s) 112, 257
DinI GGCGCC 1 cut(s) 76
DpnI GATC 4 cut(s) 5, 26, 90, 272
DpnII GATC 4 cut(s) 3, 24, 88, 270
EciI GGCGGA 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 3
FaiI YATR 2 cut(s) 254, 368
FaqI GGGAC 2 cut(s) 194, 269
Fnu4HI GCNGC 3 cut(s) 70, 73, 312
Fsp4HI GCNGC 3 cut(s) 70, 73, 312
GlaI GCGC 2 cut(s) 68, 76
GluI GCNGC 3 cut(s) 70, 73, 312
GsaI CCCAGC 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 5 cut(s) 36, 50, 122, 138, 360
HapII CCGG 1 cut(s) 135
HhaI GCGC 2 cut(s) 69, 77
Hin1I GRCGYC 2 cut(s) 12, 75
Hin6I GCGC 2 cut(s) 67, 75
HinP1I GCGC 2 cut(s) 67, 75
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 204, 223
Hpy188I TCNGA 3 cut(s) 8, 29, 270
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 204, 223
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 89, 223
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 2 cut(s) 12, 305
HpyCH4V TGCA 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 317
HpyF3I CTNAG 2 cut(s) 112, 257
HpySE526I ACGT 2 cut(s) 12, 305
Hsp92I GRCGYC 2 cut(s) 12, 75
HspAI GCGC 2 cut(s) 67, 75
KasI GGCGCC 1 cut(s) 74
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 4 cut(s) 3, 24, 88, 270
LmnI GCTCC 2 cut(s) 189, 343
LpnPI CCDG 6 cut(s) 70, 104, 131, 143, 148, 160
MaeII ACGT 2 cut(s) 12, 305
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 5, 26, 90, 272
MboI GATC 4 cut(s) 3, 24, 88, 270
MboII GAAGA 3 cut(s) 31, 208, 238
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 192, 412
Mly113I GGCGCC 1 cut(s) 75
MseI TTAA 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 119, 135
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 56, 317
NarI GGCGCC 1 cut(s) 75
NciI CCSGG 1 cut(s) 135
NdeII GATC 4 cut(s) 3, 24, 88, 270
NlaIV GGNNCC 2 cut(s) 49, 76
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 320
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 285
PkrI GCNGC 3 cut(s) 71, 74, 313
PluTI GGCGCC 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 49, 76
PspPI GGNCC 4 cut(s) 34, 48, 121, 137
RsaI GTAC 2 cut(s) 203, 376
RsaNI GTAC 2 cut(s) 202, 375
RseI CAYNNNNRTG 1 cut(s) 320
SacII CCGCGG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 3 cut(s) 70, 73, 312
Sau3AI GATC 4 cut(s) 3, 24, 88, 270
Sau96I GGNCC 4 cut(s) 34, 48, 121, 137
ScrFI CCNGG 2 cut(s) 119, 135
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 15, 156, 186, 228, 308, 357
SfoI GGCGCC 1 cut(s) 76
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 192, 412
SsiI CCGC 6 cut(s) 70, 72, 231, 237, 312, 318
SspDI GGCGCC 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 117, 133
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 2 cut(s) 15, 308
TaqI TCGA 1 cut(s) 15
TasI AATT 2 cut(s) 192, 412
TatI WGTACW 1 cut(s) 201
TauI GCSGC 3 cut(s) 72, 75, 314
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.