Prupe.7G224900_v2.0.a1

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015971
Physical Location & Seq
Forward (+)
19970879 .. 19971411
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G224900.1

Sequence Viewer

Length: 417 bp
ATGATCGGAGACGTTGAGAAGATGATCGCGGTGGGCCTCGTTTGGGGCGCCACCAACGCCCTAATGCGCCGCGGCGCTCTCCTCTGGGACCAAGCCCTCAAATCCTCCTCCTCGGCCCAGGCCCAGGCCCAGCCCGGCAGAATTCACCACAAGCTTCTCACTTCCATCAAGAGCTGGCTCAAGCTCCTCTCAATCTGGCAGTACACAGTCCCCTTCTTCGTTAACCTCTCGGCCTCCGCTACTTTCTTCGCTATACTCAGCCACACCCCAATCTCCTTGGCCGTGCCCGTCACCAATGCGACGACGTTTGCCGCCACTGCCGTCTTTGGGTGGCTCTTGGGGGAACAGACCCACCTCGGCCTCGCTTTGTTCGGTACGGCTTTGATTGTTTTGGGCATTTGGCTTTGTATCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

139

Amino Acids

14.89

Weight (kDa)

9.74

Isoelectric Point (pI)

26.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 29, 72
AciI CCGC 5 cut(s) 29, 70, 72, 237, 312
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 203, 376
AfiI CCNNNNNNNGG 3 cut(s) 43, 124, 327
AjnI CCWGG 2 cut(s) 117, 123
AluBI AGCT 3 cut(s) 154, 174, 184
AluI AGCT 3 cut(s) 154, 174, 184
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 7 cut(s) 34, 114, 120, 126, 231, 279, 358
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 3 cut(s) 50, 69, 77
AspS9I GGNCC 5 cut(s) 34, 88, 115, 121, 127
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 137, 283
AvaII GGWCC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 47
BccI CCATC 1 cut(s) 173
BceAI ACGGC 3 cut(s) 266, 305, 393
BciT130I CCWGG 2 cut(s) 119, 125
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 2 cut(s) 51, 78
BisI GCNGC 3 cut(s) 70, 73, 312
BlsI GCNGC 3 cut(s) 71, 74, 313
Bme1390I CCNGG 3 cut(s) 119, 125, 135
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 5 cut(s) 34, 88, 115, 121, 127
BmiI GGNNCC 2 cut(s) 49, 89
BmrFI CCNGG 3 cut(s) 119, 125, 135
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 6 cut(s) 70, 111, 117, 123, 276, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 124, 327
BseBI CCWGG 2 cut(s) 119, 125
BseDI CCNNGG 6 cut(s) 70, 111, 117, 123, 276, 355
BseLI CCNNNNNNNGG 3 cut(s) 43, 124, 327
BseMII CTCAG 1 cut(s) 271
BseRI GAGGAG 4 cut(s) 71, 97, 100, 176
BseSI GKGCMC 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 29, 72
BshFI GGCC 7 cut(s) 36, 116, 122, 128, 233, 281, 360
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 2 cut(s) 101, 194
BslI CCNNNNNNNGG 3 cut(s) 43, 124, 327
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 101, 194
BsnI GGCC 7 cut(s) 36, 116, 122, 128, 233, 281, 360
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 3, 24
BspACI CCGC 5 cut(s) 29, 70, 72, 237, 312
BspANI GGCC 7 cut(s) 36, 116, 122, 128, 233, 281, 360
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 2 cut(s) 29, 72
BspLI GGNNCC 2 cut(s) 49, 89
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 6 cut(s) 70, 111, 117, 123, 276, 355
BssMI GATC 2 cut(s) 3, 24
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 119, 125
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 70
BstFNI CGCG 2 cut(s) 29, 72
BstH2I RGCGCY 2 cut(s) 51, 78
BstHHI GCGC 3 cut(s) 50, 69, 77
BstKTI GATC 2 cut(s) 6, 27
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 3, 24
BstMWI GCNNNNNNNGC 2 cut(s) 56, 317
BstNI CCWGG 2 cut(s) 119, 125
BstSCI CCNGG 3 cut(s) 117, 123, 133
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 2 cut(s) 29, 72
BsuRI GGCC 7 cut(s) 36, 116, 122, 128, 233, 281, 360
BtgI CCRYGG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 3 cut(s) 50, 69, 77
Cfr13I GGNCC 5 cut(s) 34, 88, 115, 121, 127
Cfr42I CCGCGG 1 cut(s) 73
Csp6I GTAC 2 cut(s) 202, 375
CviQI GTAC 2 cut(s) 202, 375
DdeI CTNAG 1 cut(s) 257
DinI GGCGCC 1 cut(s) 49
DpnI GATC 2 cut(s) 5, 26
DpnII GATC 2 cut(s) 3, 24
EaeI YGGCCR 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 117, 123
EcoT14I CCWWGG 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 3
FaiI YATR 1 cut(s) 254
FaqI GGGAC 2 cut(s) 101, 194
Fnu4HI GCNGC 3 cut(s) 70, 73, 312
Fsp4HI GCNGC 3 cut(s) 70, 73, 312
GlaI GCGC 3 cut(s) 49, 68, 76
GluI GCNGC 3 cut(s) 70, 73, 312
GsaI CCCAGC 1 cut(s) 133
HaeII RGCGCY 2 cut(s) 51, 78
HaeIII GGCC 7 cut(s) 36, 116, 122, 128, 233, 281, 360
HapII CCGG 1 cut(s) 135
HhaI GCGC 3 cut(s) 50, 69, 77
Hin1I GRCGYC 1 cut(s) 48
Hin6I GCGC 3 cut(s) 48, 67, 75
HinP1I GCGC 3 cut(s) 48, 67, 75
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 152
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 137, 283
Hpy166II GTNNAC 2 cut(s) 204, 223
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 2 cut(s) 204, 223
Hpy99I CGWCG 2 cut(s) 304, 307
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 3 cut(s) 12, 305, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 317
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 3 cut(s) 12, 305, 413
Hsp92I GRCGYC 1 cut(s) 48
HspAI GCGC 3 cut(s) 48, 67, 75
KasI GGCGCC 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 2 cut(s) 3, 24
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 9 cut(s) 70, 104, 110, 131, 137, 143, 148, 160, 181
MaeII ACGT 3 cut(s) 12, 305, 413
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 5, 26
MboI GATC 2 cut(s) 3, 24
MboII GAAGA 3 cut(s) 31, 208, 238
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 48
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 3 cut(s) 119, 125, 135
MvaI CCWGG 2 cut(s) 119, 125
MvnI CGCG 2 cut(s) 29, 72
MwoI GCNNNNNNNGC 2 cut(s) 56, 317
NarI GGCGCC 1 cut(s) 48
NciI CCSGG 1 cut(s) 135
NdeII GATC 2 cut(s) 3, 24
NlaIV GGNNCC 2 cut(s) 49, 89
NmeAIII GCCGAG 3 cut(s) 92, 209, 336
NmuCI GTSAC 1 cut(s) 289
PkrI GCNGC 3 cut(s) 71, 74, 313
PluTI GGCGCC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 117, 123
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 2 cut(s) 117, 123
PspN4I GGNNCC 2 cut(s) 49, 89
PspPI GGNCC 5 cut(s) 34, 88, 115, 121, 127
RsaI GTAC 2 cut(s) 203, 376
RsaNI GTAC 2 cut(s) 202, 375
SacII CCGCGG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 70, 73, 312
Sau3AI GATC 2 cut(s) 3, 24
Sau96I GGNCC 5 cut(s) 34, 88, 115, 121, 127
ScrFI CCNGG 3 cut(s) 119, 125, 135
SduI GDGCHC 1 cut(s) 288
SetI ASST 8 cut(s) 15, 156, 176, 186, 228, 308, 357, 416
SfoI GGCGCC 1 cut(s) 49
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 141
SsiI CCGC 5 cut(s) 29, 70, 72, 237, 312
SspDI GGCGCC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 117, 123, 133
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 3 cut(s) 15, 308, 416
TasI AATT 1 cut(s) 141
TatI WGTACW 1 cut(s) 201
TauI GCSGC 3 cut(s) 72, 75, 314
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.