Rh2CG062700

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015971
Physical Location & Seq
Reverse (-)
5145839 .. 5147376
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG062700.1

Sequence Viewer

Length: 471 bp
ATGGTCGGAGACATAGAGAAGATGATCGCGGTGGGCCTAGTCTGGGGCGCCACCAACGCGCTAATGCGACGTGGCGCTCTCCTATGGGACGAAGCCCTCAAGTCCTCCACCTCATCCTCGCAGCCACAGCCGATCACTTCCCTCAAGAAATGGCTGAAGCTCCTCTCAATCTGGCAGTACACCATTCCCTTCTCCGTCAACCTCTCCGCCTCCGCCACTTTCTTCGCCATTCTCAGCCACACCCCGATCTCGCTCGCTGTCCCCGTCACCAATGCGACGACGTTTGCTGCCACCGCCGTTTTCGGAATTCTGTTTGGAGAACAGACCCACCTGGGCCTGGCCTTGTTCGTTTGCAGGGGTAGTGGCGGCGCATTGAGTGGTGCTGCTCGGTCCATCCCACTTGCAGGCCCTTGCCCTGAAGTTGCGCAATCTAGCTATGAATGGGGCACTGGTCCAGTCGATTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

156

Amino Acids

16.44

Weight (kDa)

6.71

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 109 8.7e-22 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 29, 59
AciI CCGC 5 cut(s) 29, 207, 213, 294, 366
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 2 cut(s) 176, 438
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 43, 337, 404
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 2 cut(s) 330, 336
AluBI AGCT 2 cut(s) 160, 435
AluI AGCT 2 cut(s) 160, 435
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 4 cut(s) 34, 334, 339, 406
ApeKI GCWGC 3 cut(s) 121, 287, 383
ApoI RAATTY 1 cut(s) 306
AspLEI GCGC 5 cut(s) 50, 61, 77, 371, 427
AspS9I GGNCC 5 cut(s) 34, 334, 390, 407, 452
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 390, 452
BaeGI GKGCMC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 3 cut(s) 133, 274, 370
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 2 cut(s) 332, 338
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 3 cut(s) 38, 432, 469
BfoI RGCGCY 2 cut(s) 51, 78
BisI GCNGC 4 cut(s) 122, 288, 367, 384
BlsI GCNGC 4 cut(s) 123, 289, 368, 385
Bme1390I CCNGG 2 cut(s) 332, 338
Bme18I GGWCC 2 cut(s) 390, 452
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 5 cut(s) 34, 334, 390, 407, 452
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 332, 338
BpuEI CTTGAG 2 cut(s) 83, 128
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 337, 404
Bse1I ACTGG 2 cut(s) 454, 455
BseBI CCWGG 2 cut(s) 332, 338
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 113, 393
BseLI CCNNNNNNNGG 3 cut(s) 43, 337, 404
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 454, 455
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 3 cut(s) 133, 274, 370
Bsh1236I CGCG 2 cut(s) 29, 59
BshFI GGCC 4 cut(s) 36, 336, 341, 408
BshNI GGYRCC 1 cut(s) 47
BslFI GGGAC 2 cut(s) 101, 245
BslI CCNNNNNNNGG 3 cut(s) 43, 337, 404
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 101, 245
BsnI GGCC 4 cut(s) 36, 336, 341, 408
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 24, 132, 246
BspACI CCGC 5 cut(s) 29, 207, 213, 294, 366
BspANI GGCC 4 cut(s) 36, 336, 341, 408
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 2 cut(s) 29, 59
BspLI GGNNCC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 454, 455
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 3 cut(s) 24, 132, 246
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 332, 338
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 255, 406
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 113, 393
BstFNI CGCG 2 cut(s) 29, 59
BstH2I RGCGCY 2 cut(s) 51, 78
BstHHI GCGC 5 cut(s) 50, 61, 77, 371, 427
BstKTI GATC 3 cut(s) 27, 135, 249
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 3 cut(s) 24, 132, 246
BstMWI GCNNNNNNNGC 3 cut(s) 56, 127, 293
BstNI CCWGG 2 cut(s) 332, 338
BstSCI CCNGG 2 cut(s) 330, 336
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 2 cut(s) 29, 59
BstV1I GCAGC 3 cut(s) 133, 274, 370
BsuRI GGCC 4 cut(s) 36, 336, 341, 408
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 113, 393
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 255, 406
CfoI GCGC 5 cut(s) 50, 61, 77, 371, 427
Cfr13I GGNCC 5 cut(s) 34, 334, 390, 407, 452
Csp6I GTAC 1 cut(s) 178
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 233
DinI GGCGCC 1 cut(s) 49
DpnI GATC 3 cut(s) 26, 134, 248
DpnII GATC 3 cut(s) 24, 132, 246
EciI GGCGGA 2 cut(s) 196, 202
Eco47I GGWCC 2 cut(s) 390, 452
Eco57I CTGAAG 2 cut(s) 176, 438
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 330, 336
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaiI YATR 3 cut(s) 14, 85, 438
FaqI GGGAC 2 cut(s) 101, 245
Fnu4HI GCNGC 4 cut(s) 122, 288, 367, 384
FokI GGATG 2 cut(s) 100, 380
Fsp4HI GCNGC 4 cut(s) 122, 288, 367, 384
FspBI CTAG 3 cut(s) 38, 432, 469
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 5 cut(s) 49, 60, 76, 370, 426
GluI GCNGC 4 cut(s) 122, 288, 367, 384
HaeII RGCGCY 2 cut(s) 51, 78
HaeIII GGCC 4 cut(s) 36, 336, 341, 408
HhaI GCGC 5 cut(s) 50, 61, 77, 371, 427
Hin1I GRCGYC 1 cut(s) 48
Hin6I GCGC 5 cut(s) 48, 59, 75, 369, 425
HinP1I GCGC 5 cut(s) 48, 59, 75, 369, 425
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 180, 199
Hpy188I TCNGA 2 cut(s) 8, 305
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 180, 199
Hpy99I CGWCG 3 cut(s) 72, 280, 283
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 70, 281
HpyCH4V TGCA 2 cut(s) 354, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 127, 293
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 70, 281
Hsp92I GRCGYC 1 cut(s) 48
HspAI GCGC 5 cut(s) 48, 59, 75, 369, 425
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 3 cut(s) 24, 132, 246
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 3 cut(s) 133, 274, 370
MaeI CTAG 3 cut(s) 38, 432, 469
MaeII ACGT 2 cut(s) 70, 281
MaeIII GTNAC 1 cut(s) 265
MalI GATC 3 cut(s) 26, 134, 248
MboI GATC 3 cut(s) 24, 132, 246
MboII GAAGA 2 cut(s) 31, 214
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 48
MnlI CCTC 8 cut(s) 107, 115, 121, 127, 152, 173, 212, 220
MspR9I CCNGG 2 cut(s) 332, 338
MvaI CCWGG 2 cut(s) 332, 338
MvnI CGCG 2 cut(s) 29, 59
MwoI GCNNNNNNNGC 3 cut(s) 56, 127, 293
NarI GGCGCC 1 cut(s) 48
NdeII GATC 3 cut(s) 24, 132, 246
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 265
NsbI TGCGCA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PkrI GCNGC 4 cut(s) 123, 289, 368, 385
PluTI GGCGCC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 330, 336
PspGI CCWGG 2 cut(s) 330, 336
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 5 cut(s) 34, 334, 390, 407, 452
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 4 cut(s) 122, 288, 367, 384
Sau3AI GATC 3 cut(s) 24, 132, 246
Sau96I GGNCC 5 cut(s) 34, 334, 390, 407, 452
ScrFI CCNGG 2 cut(s) 332, 338
SduI GDGCHC 1 cut(s) 449
SetI ASST 7 cut(s) 73, 113, 162, 204, 284, 333, 437
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 2 cut(s) 390, 452
SmlI CTYRAG 2 cut(s) 98, 143
SmoI CTYRAG 2 cut(s) 98, 143
Sse9I AATT 1 cut(s) 306
SsiI CCGC 5 cut(s) 29, 207, 213, 294, 366
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 3 cut(s) 38, 432, 469
StyD4I CCNGG 2 cut(s) 330, 336
TaiI ACGT 2 cut(s) 73, 284
TaqI TCGA 1 cut(s) 459
TaqII GACCGA 1 cut(s) 378
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 369
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 121, 287, 383
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 2 cut(s) 390, 452
XapI RAATTY 1 cut(s) 306
XspI CTAG 3 cut(s) 38, 432, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.