MD15G1192300.v1.1

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015971
Physical Location & Seq
Reverse (-)
15178446 .. 15178853
408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1192300.v1.1.491

Sequence Viewer

Length: 408 bp
ATGATCGGAGACGTCGAGAAGATGATCGGAGTTGGCCTCGTTTGGGGTGCCACCAACGCCCTAATGCGCCGCGGCGCCCTCCTCTGGGACCAAGCCCTCAAATCCTCCTCTGCCCATGCCCAGCCCGGCCCAATCCACCACAAGCTTCTCGCCTCCTTGACGAGCTGGCTCAGGCTCCTCGCAATCTGGCAGTATACAGTCCCCTTCTTCGTCAACCTCTCCGCCTCTGCCACTTTCTTCGCCATACTCAGCCACACTCCGATCTCGCTTGCCGTCCCCGTCACCAATGCGACGACCTTCGCCGCCACCGCCGTGTTTGGCTTGCTCTTGGGGGAGCAGACCCACCTCGGCCTCGCTATGTTCGGTACGGCTTTGATTGTTTTGGGCATTTGGCTTTGCATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

136

Amino Acids

14.45

Weight (kDa)

9.1

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 134 8.2e-25 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 15
AccB1I GGYRCC 2 cut(s) 47, 74
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 72
AciI CCGC 5 cut(s) 70, 72, 222, 303, 309
AcyI GRCGYC 2 cut(s) 12, 75
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 43, 84, 85
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 2 cut(s) 145, 165
AluI AGCT 2 cut(s) 145, 165
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 3 cut(s) 34, 127, 349
AspLEI GCGC 2 cut(s) 69, 77
AspS9I GGNCC 2 cut(s) 88, 128
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 88
BanI GGYRCC 2 cut(s) 47, 74
BceAI ACGGC 3 cut(s) 257, 296, 384
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 3 cut(s) 70, 73, 303
BlsI GCNGC 3 cut(s) 71, 74, 304
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 88, 128
BmiI GGNNCC 4 cut(s) 49, 76, 89, 176
BmrFI CCNGG 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 21, 53
Bpu10I CCTNAGC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 126
BsaHI GRCGYC 2 cut(s) 12, 75
BsaJI CCNNGG 2 cut(s) 70, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 84, 85
BseDI CCNNGG 2 cut(s) 70, 346
BseLI CCNNNNNNNGG 3 cut(s) 43, 84, 85
BseMII CTCAG 2 cut(s) 184, 262
BseRI GAGGAG 3 cut(s) 71, 97, 167
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 36, 129, 351
BshNI GGYRCC 2 cut(s) 47, 74
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 3 cut(s) 101, 185, 260
BslI CCNNNNNNNGG 3 cut(s) 43, 84, 85
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 3 cut(s) 101, 185, 260
BsnI GGCC 3 cut(s) 36, 129, 351
Bsp143I GATC 3 cut(s) 3, 24, 261
BspACI CCGC 5 cut(s) 70, 72, 222, 303, 309
BspANI GGCC 3 cut(s) 36, 129, 351
BspCNI CTCAG 2 cut(s) 183, 261
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 4 cut(s) 49, 76, 89, 176
BspT107I GGYRCC 2 cut(s) 47, 74
BssECI CCNNGG 2 cut(s) 70, 346
BssMI GATC 3 cut(s) 3, 24, 261
BssNAI GTATAC 1 cut(s) 195
BssNI GRCGYC 2 cut(s) 12, 75
Bst1107I GTATAC 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 2 cut(s) 12, 75
BstC8I GCNNGC 3 cut(s) 167, 270, 323
BstDEI CTNAG 2 cut(s) 170, 248
BstDSI CCRYGG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 69, 77
BstKTI GATC 3 cut(s) 6, 27, 264
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 3 cut(s) 3, 24, 261
BstMWI GCNNNNNNNGC 2 cut(s) 56, 308
BstSCI CCNGG 1 cut(s) 124
BstUI CGCG 1 cut(s) 72
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 36, 129, 351
BtgI CCRYGG 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 167, 270, 323
CfoI GCGC 2 cut(s) 69, 77
Cfr13I GGNCC 2 cut(s) 88, 128
Cfr42I CCGCGG 1 cut(s) 73
Csp6I GTAC 1 cut(s) 366
CviAII CATG 1 cut(s) 116
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 2 cut(s) 170, 248
DinI GGCGCC 1 cut(s) 76
DpnI GATC 3 cut(s) 5, 26, 263
DpnII GATC 3 cut(s) 3, 24, 261
EciI GGCGGA 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 1 cut(s) 119
FaiI YATR 4 cut(s) 117, 195, 245, 359
FaqI GGGAC 3 cut(s) 101, 185, 260
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 70, 73, 303
Fsp4HI GCNGC 3 cut(s) 70, 73, 303
GlaI GCGC 2 cut(s) 68, 76
GluI GCNGC 3 cut(s) 70, 73, 303
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 3 cut(s) 36, 129, 351
HapII CCGG 1 cut(s) 126
HhaI GCGC 2 cut(s) 69, 77
Hin1I GRCGYC 2 cut(s) 12, 75
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 2 cut(s) 67, 75
HinP1I GCGC 2 cut(s) 67, 75
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 143
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 195, 214
Hpy188I TCNGA 3 cut(s) 8, 29, 261
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 195, 214
Hpy99I CGWCG 2 cut(s) 17, 295
HpyAV CCTTC 2 cut(s) 214, 307
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 308
HpyF3I CTNAG 2 cut(s) 170, 248
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 2 cut(s) 12, 75
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 2 cut(s) 67, 75
KasI GGCGCC 1 cut(s) 74
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 3 cut(s) 3, 24, 261
LmnI GCTCC 2 cut(s) 180, 334
LpnPI CCDG 6 cut(s) 70, 134, 139, 151, 157, 172
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 5, 26, 263
MboI GATC 3 cut(s) 3, 24, 261
MboII GAAGA 3 cut(s) 31, 199, 229
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 75
MseI TTAA 1 cut(s) 406
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 56, 308
NarI GGCGCC 1 cut(s) 75
NciI CCSGG 1 cut(s) 126
NdeII GATC 3 cut(s) 3, 24, 261
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 4 cut(s) 49, 76, 89, 176
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 3 cut(s) 71, 74, 304
PluTI GGCGCC 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 4 cut(s) 49, 76, 89, 176
PspPI GGNCC 2 cut(s) 88, 128
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 311
SacII CCGCGG 1 cut(s) 73
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 3 cut(s) 70, 73, 303
Sau3AI GATC 3 cut(s) 3, 24, 261
Sau96I GGNCC 2 cut(s) 88, 128
ScrFI CCNGG 1 cut(s) 126
SetI ASST 6 cut(s) 15, 147, 167, 219, 299, 348
SfoI GGCGCC 1 cut(s) 76
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 1 cut(s) 403
SsiI CCGC 5 cut(s) 70, 72, 222, 303, 309
SspDI GGCGCC 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 403
TauI GCSGC 3 cut(s) 72, 75, 305
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 194
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.