Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015971

Physical Location & Seq

Genomic Coordinates Reverse (-)

1388135 .. 1388840

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCATTGATTATTAAGAATAGTGACCTTGAAGAGCTCAGAGAATTGGGTTCTGGAACCTTTGGTATCTTCTACCATGGAAAGTGGAGGGGCACTGATGTTGCAATCAAACGAATCAATGATAGGTGTTTTGCTGGGAAGCCTTCAGAACAGGAGCGGATGAGAAATGATTTCTGGAATGAGGCCATCAACCTCGCTGACTTGCACCACCCAAATGTGGTAGCTTTTTATGGCGTTGTACTTGATGGCCCGGGAGGTTCTGTGGCAACCGTGACAGAGTTTATGGTTAATGGTTCTCTTAGAAATGCCTTGCAGAAGAATGAGAAGAGTTTGGACAAGCGCAAACGTCTATTGATTGCAATGGATGTGGCATTTGGAATGGAGTACCTAATGGCCCGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM234

Protein Analysis

134

Amino Acids

15.13

Weight (kDa)

6.84

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 131	1.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 133	5.1e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19570
fragaria_vesca	FvH4_1g05720
malus_domestica	MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica	Prupe.7G224900_v2.0.a1
pyrus_communis	pycom02g04700
rosa_chinensis	RchiOBHm_Chr2g0091331
rosa_laevigata	RLG00000016212
rosa_multiflora	Rmu_sc0002270.1_g000049
rosa_roxburghii	Rroxscaffold_2G00150200
rosa_rugosa	Rorug02G0016400
rosa_samantha	Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana	Rw2G004850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	129
AfaI	GTAC	2 cut(s)	240, 386
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	2 cut(s)	37, 224
AluI	AGCT	2 cut(s)	37, 224
Alw21I	GWGCWC	1 cut(s)	39
Ama87I	CYCGRG	2 cut(s)	250, 396
AoxI	GGCC	3 cut(s)	183, 247, 393
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	248, 394
AsuC2I	CCSGG	4 cut(s)	251, 252, 397, 398
AvaI	CYCGRG	2 cut(s)	250, 396
BaeGI	GKGCMC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	2 cut(s)	194, 239
BcnI	CCSGG	4 cut(s)	251, 252, 397, 398
Bme1390I	CCNGG	4 cut(s)	251, 252, 397, 398
BmeT110I	CYCGRG	2 cut(s)	250, 396
BmgT120I	GGNCC	2 cut(s)	248, 394
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	4 cut(s)	251, 252, 397, 398
BpuMI	CCSGG	4 cut(s)	251, 252, 397, 398
BsaJI	CCNNGG	3 cut(s)	76, 250, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	76, 250, 396
BseGI	GGATG	2 cut(s)	165, 370
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	95
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	3 cut(s)	185, 249, 395
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	2 cut(s)	250, 396
BsiSI	CCGG	2 cut(s)	251, 397
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	3 cut(s)	185, 249, 395
BsoBI	CYCGRG	2 cut(s)	250, 396
Bsp1286I	GDGCHC	2 cut(s)	39, 95
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	3 cut(s)	185, 249, 395
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	58
BspQI	GCTCTTC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	366
BssECI	CCNNGG	3 cut(s)	76, 250, 396
BssT1I	CCWWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	27, 320
BstDEI	CTNAG	2 cut(s)	38, 299
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	165, 370
BstHHI	GCGC	1 cut(s)	342
BstSCI	CCNGG	4 cut(s)	249, 250, 395, 396
BstSLI	GKGCMC	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	185, 249, 395
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	165, 370
BtsIMutI	CAGTG	1 cut(s)	93
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	248, 394
Cfr9I	CCCGGG	2 cut(s)	250, 396
Csp6I	GTAC	2 cut(s)	239, 385
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	37, 142, 185, 224, 249, 395
CviKI_1	RGCY	6 cut(s)	37, 142, 185, 224, 249, 395
CviQI	GTAC	2 cut(s)	239, 385
DdeI	CTNAG	2 cut(s)	38, 299
Eam1104I	CTCTTC	2 cut(s)	27, 320
EarI	CTCTTC	2 cut(s)	27, 320
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	2 cut(s)	250, 396
EcoICRI	GAGCTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	80
FaiI	YATR	3 cut(s)	78, 231, 284
FatI	CATG	1 cut(s)	76
FokI	GGATG	2 cut(s)	172, 377
FriOI	GRGCYC	1 cut(s)	39
GlaI	GCGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	185, 249, 395
HapII	CCGG	2 cut(s)	251, 397
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	2 cut(s)	251, 397
Hpy188I	TCNGA	2 cut(s)	41, 148
Hpy188III	TCNNGA	2 cut(s)	54, 175
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	104, 205, 313, 359
HpyF3I	CTNAG	2 cut(s)	38, 299
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	39, 120, 137, 160, 264
MaeII	ACGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	23, 271
MbiI	CCGCTC	1 cut(s)	157
MboII	GAAGA	4 cut(s)	44, 61, 328, 337
MhlI	GDGCHC	2 cut(s)	39, 95
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	4 cut(s)	81, 175, 203, 248
MseI	TTAA	2 cut(s)	15, 288
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	2 cut(s)	251, 397
MspR9I	CCNGG	4 cut(s)	251, 252, 397, 398
NciI	CCSGG	4 cut(s)	251, 252, 397, 398
NcoI	CCATGG	1 cut(s)	76
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	2 cut(s)	23, 271
PciSI	GCTCTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	248, 394
RsaI	GTAC	2 cut(s)	240, 386
RsaNI	GTAC	2 cut(s)	239, 385
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	15, 288
Sau96I	GGNCC	2 cut(s)	248, 394
ScrFI	CCNGG	4 cut(s)	251, 252, 397, 398
SduI	GDGCHC	2 cut(s)	39, 95
SetI	ASST	9 cut(s)	30, 39, 62, 128, 195, 226, 259, 349, 390
SmaI	CCCGGG	2 cut(s)	252, 398
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	157
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	4 cut(s)	249, 250, 395, 396
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	349
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	15, 288
Tru9I	TTAA	2 cut(s)	15, 288
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	23, 271
Tsp45I	GTSAC	2 cut(s)	23, 271
TspMI	CCCGGG	2 cut(s)	250, 396
TspRI	CASTG	1 cut(s)	100
XmaI	CCCGGG	2 cut(s)	250, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.