RLG00000016212

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015971
Physical Location & Seq
Reverse (-)
4772242 .. 4772910
669 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016212

Sequence Viewer

Length: 387 bp
ATGGTCGGAGACATAGAGAAGATGATCGCGGTGGGCCTAGTCTGGGGCGCCACCAACGCGCTAATGCGACGTGGCGCTCTCCTATGGGACCAAGCCCTCAAGTCCTCCACCTCATCGTCCCAGCCACAGCCGATCACTTCCCTCAAGAAATGGCTGAAGCTCCTCTCAATCTGGCAGTACACCATTCCCTTCTCCGTCAACCTCTCCGCCTCCGCCACTTTCTTCGCCATTCTCAGCCACACCCCGATCTCTCTCGCCGTCCCCGTCACCAATGCGACGACGTTTGCTGCCACCGCCGTTTTCGGAATTCTGTTGGGAGAACAGACCCACCTGGGCCTGGCCTTGTTCGGATCTTTAGCATTTGTTGAAATCGCATTCGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

129

Amino Acids

13.7

Weight (kDa)

8.14

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 111 7.8e-23 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 29, 59
AciI CCGC 4 cut(s) 29, 207, 213, 294
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 43, 337
AgsI TTSAA 1 cut(s) 368
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 2 cut(s) 330, 336
AluBI AGCT 2 cut(s) 160, 384
AluI AGCT 2 cut(s) 160, 384
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 358
AoxI GGCC 3 cut(s) 34, 334, 339
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 306
AspLEI GCGC 3 cut(s) 50, 61, 77
AspS9I GGNCC 3 cut(s) 34, 88, 334
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 2 cut(s) 242, 281
BciT130I CCWGG 2 cut(s) 332, 338
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 2 cut(s) 38, 385
BfoI RGCGCY 2 cut(s) 51, 78
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 332, 338
Bme18I GGWCC 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 34, 88, 334
BmiI GGNNCC 2 cut(s) 49, 89
BmrFI CCNGG 2 cut(s) 332, 338
BpuEI CTTGAG 2 cut(s) 83, 128
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 331
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 337
BseBI CCWGG 2 cut(s) 332, 338
BseDI CCNNGG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 43, 337
BseMII CTCAG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 2 cut(s) 29, 59
BshFI GGCC 3 cut(s) 36, 336, 341
BshNI GGYRCC 1 cut(s) 47
BslFI GGGAC 3 cut(s) 101, 103, 245
BslI CCNNNNNNNGG 2 cut(s) 43, 337
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 3 cut(s) 101, 103, 245
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 3 cut(s) 36, 336, 341
Bsp143I GATC 4 cut(s) 24, 132, 246, 350
BspACI CCGC 4 cut(s) 29, 207, 213, 294
BspANI GGCC 3 cut(s) 36, 336, 341
BspCNI CTCAG 1 cut(s) 246
BspFNI CGCG 2 cut(s) 29, 59
BspLI GGNNCC 2 cut(s) 49, 89
BspPI GGATC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 4 cut(s) 24, 132, 246, 350
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 332, 338
BstACI GRCGYC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 233
BstFNI CGCG 2 cut(s) 29, 59
BstH2I RGCGCY 2 cut(s) 51, 78
BstHHI GCGC 3 cut(s) 50, 61, 77
BstKTI GATC 4 cut(s) 27, 135, 249, 353
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 4 cut(s) 24, 132, 246, 350
BstMWI GCNNNNNNNGC 2 cut(s) 56, 293
BstNI CCWGG 2 cut(s) 332, 338
BstSCI CCNGG 2 cut(s) 330, 336
BstUI CGCG 2 cut(s) 29, 59
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 3 cut(s) 36, 336, 341
BtrI CACGTC 1 cut(s) 71
CfoI GCGC 3 cut(s) 50, 61, 77
Cfr13I GGNCC 3 cut(s) 34, 88, 334
Csp6I GTAC 1 cut(s) 178
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 233
DinI GGCGCC 1 cut(s) 49
DpnI GATC 4 cut(s) 26, 134, 248, 352
DpnII GATC 4 cut(s) 24, 132, 246, 350
EciI GGCGGA 2 cut(s) 196, 202
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 330, 336
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaiI YATR 2 cut(s) 14, 85
FaqI GGGAC 3 cut(s) 101, 103, 245
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 2 cut(s) 38, 385
GlaI GCGC 3 cut(s) 49, 60, 76
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 2 cut(s) 51, 78
HaeIII GGCC 3 cut(s) 36, 336, 341
HhaI GCGC 3 cut(s) 50, 61, 77
Hin1I GRCGYC 1 cut(s) 48
Hin6I GCGC 3 cut(s) 48, 59, 75
HinP1I GCGC 3 cut(s) 48, 59, 75
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 180, 199
Hpy188I TCNGA 3 cut(s) 8, 305, 350
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 180, 199
Hpy99I CGWCG 3 cut(s) 72, 280, 283
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 70, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 293
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 70, 281
Hsp92I GRCGYC 1 cut(s) 48
HspAI GCGC 3 cut(s) 48, 59, 75
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 4 cut(s) 24, 132, 246, 350
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 7 cut(s) 28, 134, 157, 317, 323, 344, 350
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 2 cut(s) 38, 385
MaeII ACGT 2 cut(s) 70, 281
MaeIII GTNAC 1 cut(s) 265
MalI GATC 4 cut(s) 26, 134, 248, 352
MboI GATC 4 cut(s) 24, 132, 246, 350
MboII GAAGA 2 cut(s) 31, 214
MflI RGATCY 1 cut(s) 350
MluCI AATT 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 48
MnlI CCTC 7 cut(s) 107, 115, 121, 152, 173, 212, 220
MspR9I CCNGG 2 cut(s) 332, 338
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 2 cut(s) 332, 338
MvnI CGCG 2 cut(s) 29, 59
MwoI GCNNNNNNNGC 2 cut(s) 56, 293
NarI GGCGCC 1 cut(s) 48
NdeII GATC 4 cut(s) 24, 132, 246, 350
NlaIV GGNNCC 2 cut(s) 49, 89
NmuCI GTSAC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 330, 336
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 330, 336
PspN4I GGNNCC 2 cut(s) 49, 89
PspPI GGNCC 3 cut(s) 34, 88, 334
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 4 cut(s) 24, 132, 246, 350
Sau96I GGNCC 3 cut(s) 34, 88, 334
ScrFI CCNGG 2 cut(s) 332, 338
SetI ASST 7 cut(s) 73, 113, 162, 204, 284, 333, 386
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 98, 143
SmoI CTYRAG 2 cut(s) 98, 143
Sse9I AATT 1 cut(s) 306
SsiI CCGC 4 cut(s) 29, 207, 213, 294
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 38, 385
StyD4I CCNGG 2 cut(s) 330, 336
TaiI ACGT 2 cut(s) 73, 284
TaqI TCGA 1 cut(s) 378
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 177
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 306
XspI CTAG 2 cut(s) 38, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.