Rroxscaffold_2G00150200

Transmembrane protein 234 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015971
Physical Location & Seq
Forward (+)
87639685 .. 87640320
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150200.1

Sequence Viewer

Length: 381 bp
ATGGTCGGAGACATAGAGAAGATGATCGCGGTGGGCCTGGTCTGGGGCGCCACCAACGCGCTAATGCGACGTGGCGCTCTCCTATGGGACCAAGCCCTCAAGTCCTCCCAGCCACAGCCGATCACTTCCCTCAAGAAATGGCTGAAGCTCCTCTCAATCTGGCAGTACACCATTCCCTTCTCCGTCAACCTCTCCGCCTCCGCCACTTTCTTCGCCATTCTCAGCCACACCCCCATCTCGCTCGCCGTCCCCGTCACCAATGCGACGACGTTTGCTGCCACAGCCGTTTTCGGAATTCTGTTGGGAGAACAGACCCACCTGGGCCTGGCCTTGTTCGGTACGGGTTTGATTGTTCTGGGCATTTGGCTTTGTATAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM234

Protein Analysis

126

Amino Acids

13.54

Weight (kDa)

9.43

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM234 PF10639 8 - 125 4e-27 Putative transmembrane family 234
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19570
fragaria_vesca FvH4_1g05720
malus_domestica MD02G1057900.v1.1 MD15G1192300.v1.1
prunus_persica Prupe.7G224900_v2.0.a1
pyrus_communis pycom02g04700
rosa_chinensis RchiOBHm_Chr2g0091331
rosa_laevigata RLG00000016212
rosa_multiflora Rmu_sc0002270.1_g000049
rosa_roxburghii Rroxscaffold_2G00150200
rosa_rugosa Rorug02G0016400
rosa_samantha Rh2BG060700 Rh2CG062700 Rh2DG061300
rosa_wichuraiana Rw2G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 29, 59
AciI CCGC 3 cut(s) 29, 195, 201
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 167, 340
AfiI CCNNNNNNNGG 2 cut(s) 43, 325
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 3 cut(s) 36, 318, 324
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 3 cut(s) 34, 322, 327
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 3 cut(s) 50, 61, 77
AspS9I GGNCC 3 cut(s) 34, 88, 322
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 230, 269
BciT130I CCWGG 3 cut(s) 38, 320, 326
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 2 cut(s) 51, 78
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 3 cut(s) 38, 320, 326
Bme18I GGWCC 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 34, 88, 322
BmiI GGNNCC 2 cut(s) 49, 89
BmrFI CCNGG 3 cut(s) 38, 320, 326
BpuEI CTTGAG 2 cut(s) 83, 116
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 325
BseBI CCWGG 3 cut(s) 38, 320, 326
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 43, 325
BseMII CTCAG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 2 cut(s) 29, 59
BshFI GGCC 3 cut(s) 36, 324, 329
BshNI GGYRCC 1 cut(s) 47
BslFI GGGAC 2 cut(s) 101, 233
BslI CCNNNNNNNGG 2 cut(s) 43, 325
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 101, 233
BsnI GGCC 3 cut(s) 36, 324, 329
Bsp143I GATC 2 cut(s) 24, 120
BspACI CCGC 3 cut(s) 29, 195, 201
BspANI GGCC 3 cut(s) 36, 324, 329
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 2 cut(s) 29, 59
BspLI GGNNCC 2 cut(s) 49, 89
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 24, 120
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 38, 320, 326
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 221
BstFNI CGCG 2 cut(s) 29, 59
BstH2I RGCGCY 2 cut(s) 51, 78
BstHHI GCGC 3 cut(s) 50, 61, 77
BstKTI GATC 2 cut(s) 27, 123
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 24, 120
BstMWI GCNNNNNNNGC 2 cut(s) 56, 281
BstNI CCWGG 3 cut(s) 38, 320, 326
BstSCI CCNGG 3 cut(s) 36, 318, 324
BstUI CGCG 2 cut(s) 29, 59
BstV1I GCAGC 1 cut(s) 262
BsuRI GGCC 3 cut(s) 36, 324, 329
BtrI CACGTC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 3 cut(s) 50, 61, 77
Cfr13I GGNCC 3 cut(s) 34, 88, 322
Csp6I GTAC 2 cut(s) 166, 339
CviQI GTAC 2 cut(s) 166, 339
DdeI CTNAG 1 cut(s) 221
DinI GGCGCC 1 cut(s) 49
DpnI GATC 2 cut(s) 26, 122
DpnII GATC 2 cut(s) 24, 120
EciI GGCGGA 2 cut(s) 184, 190
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 36, 318, 324
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaiI YATR 4 cut(s) 14, 85, 374, 379
FaqI GGGAC 2 cut(s) 101, 233
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
GlaI GCGC 3 cut(s) 49, 60, 76
GluI GCNGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 112
HaeII RGCGCY 2 cut(s) 51, 78
HaeIII GGCC 3 cut(s) 36, 324, 329
HhaI GCGC 3 cut(s) 50, 61, 77
Hin1I GRCGYC 1 cut(s) 48
Hin6I GCGC 3 cut(s) 48, 59, 75
HinP1I GCGC 3 cut(s) 48, 59, 75
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 168, 187
Hpy188I TCNGA 2 cut(s) 8, 293
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 2 cut(s) 168, 187
Hpy99I CGWCG 3 cut(s) 72, 268, 271
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 70, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 281
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 70, 269
Hsp92I GRCGYC 1 cut(s) 48
HspAI GCGC 3 cut(s) 48, 59, 75
KasI GGCGCC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 24, 120
LmnI GCTCC 1 cut(s) 153
Lsp1109I GCAGC 1 cut(s) 262
MaeII ACGT 2 cut(s) 70, 269
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 26, 122
MboI GATC 2 cut(s) 24, 120
MboII GAAGA 2 cut(s) 31, 202
MluCI AATT 1 cut(s) 294
Mly113I GGCGCC 1 cut(s) 48
MnlI CCTC 6 cut(s) 107, 115, 140, 161, 200, 208
MspR9I CCNGG 3 cut(s) 38, 320, 326
MvaI CCWGG 3 cut(s) 38, 320, 326
MvnI CGCG 2 cut(s) 29, 59
MwoI GCNNNNNNNGC 2 cut(s) 56, 281
NarI GGCGCC 1 cut(s) 48
NdeII GATC 2 cut(s) 24, 120
NlaIV GGNNCC 2 cut(s) 49, 89
NmuCI GTSAC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PkrI GCNGC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 36, 318, 324
PspFI CCCAGC 1 cut(s) 108
PspGI CCWGG 3 cut(s) 36, 318, 324
PspN4I GGNNCC 2 cut(s) 49, 89
PspPI GGNCC 3 cut(s) 34, 88, 322
RsaI GTAC 2 cut(s) 167, 340
RsaNI GTAC 2 cut(s) 166, 339
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 24, 120
Sau96I GGNCC 3 cut(s) 34, 88, 322
ScrFI CCNGG 3 cut(s) 38, 320, 326
SetI ASST 5 cut(s) 73, 150, 192, 272, 321
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 98, 131
SmoI CTYRAG 2 cut(s) 98, 131
Sse9I AATT 1 cut(s) 294
SsiI CCGC 3 cut(s) 29, 195, 201
SspDI GGCGCC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 36, 318, 324
TaiI ACGT 2 cut(s) 73, 272
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 165
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 88
XapI RAATTY 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.