AT5G19780

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6687030 .. 6689171
2142 bp
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UTR
Exon/CDS
Intron
AT5G19780.1

Sequence Viewer

Length: 1353 bp
ATGAGGGAAATTATTAGCATTCATATCGGACAAGCCGGGATCCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGAGCCTACCGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGACAACTGTACTGGCTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCTTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGATCATTTCATCCTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACCAGTCATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGCCGTGTTTGAGCCAGCGAGCATGATGGCAAAGTGTGACCCAAGGCACGGAAAGTACATGGCATGTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGCTGTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAAGTTTGATCTCATGTATGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGAAGGAATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGACTACGAAGAAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTGA

Protein Analysis

450

Amino Acids

49.65

Weight (kDa)

4.95

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 213 1e-62 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 263 - 392 3.4e-51 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19770 AT5G19780
fragaria_vesca FvH4_3g45490
malus_domestica MD03G1004400.v1.1 MD11G1005100.v1.1
prunus_persica Prupe.6G004100_v2.0.a1 Prupe.6G004100_v2.0.a1
pyrus_communis pycom03g00450 pycom11g00410
rosa_chinensis RchiOBHm_Chr5g0083281
rosa_laevigata RLG00000037026
rosa_multiflora Rmu_sc0011792.1_g000008
rosa_roxburghii Rroxscaffold_1G00001210
rosa_rugosa Rorug05G0484000
rosa_samantha Rh5BG560700
rosa_wichuraiana Rw5G049950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 737, 998, 1038
AciI CCGC 3 cut(s) 640, 834, 1278
AclWI GGATC 5 cut(s) 34, 47, 354, 639, 1178
AcoI YGGCCR 1 cut(s) 1275
AcsI RAATTY 2 cut(s) 52, 1250
AcuI CTGAAG 1 cut(s) 1332
AcvI CACGTG 1 cut(s) 1265
AfaI GTAC 6 cut(s) 238, 244, 388, 935, 956, 1223
AfiI CCNNNNNNNGG 2 cut(s) 926, 1108
AgsI TTSAA 6 cut(s) 148, 415, 570, 587, 682, 1054
AjnI CCWGG 1 cut(s) 1090
AloI GAACNNNNNNTCC 4 cut(s) 72, 104, 954, 986
AluBI AGCT 8 cut(s) 67, 173, 274, 373, 499, 602, 856, 1121
AluI AGCT 8 cut(s) 67, 173, 274, 373, 499, 602, 856, 1121
Alw21I GWGCWC 1 cut(s) 1218
Alw26I GTCTC 3 cut(s) 80, 158, 1314
Alw44I GTGCAC 1 cut(s) 1214
AlwI GGATC 5 cut(s) 34, 47, 354, 639, 1178
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 662, 1275
ApaLI GTGCAC 1 cut(s) 1214
ApeKI GCWGC 4 cut(s) 271, 296, 853, 989
ApoI RAATTY 2 cut(s) 52, 1250
ArsI GACNNNNNNTTYG 4 cut(s) 706, 738, 1166, 1198
Asp700I GAANNNNTTC 1 cut(s) 436
AspA2I CCTAGG 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 5 cut(s) 865, 1109, 1241, 1259, 1352
AvaI CYCGRG 1 cut(s) 209
AvrII CCTAGG 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 525
BaeGI GKGCMC 2 cut(s) 1043, 1218
BaeI ACNNNNGTAYC 4 cut(s) 108, 141, 1213, 1246
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 3 cut(s) 737, 998, 1038
BauI CACGAG 1 cut(s) 848
BbrPI CACGTG 1 cut(s) 1265
BbsI GAAGAC 2 cut(s) 190, 1275
Bbv12I GWGCWC 1 cut(s) 1218
BbvI GCAGC 4 cut(s) 283, 283, 865, 976
BccI CCATC 6 cut(s) 270, 632, 728, 749, 898, 1010
BceAI ACGGC 2 cut(s) 866, 977
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 1092
BciVI GTATCC 1 cut(s) 803
BclI TGATCA 1 cut(s) 1131
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 80, 158, 1314
BfaI CTAG 4 cut(s) 189, 312, 461, 650
BfmI CTRYAG 2 cut(s) 120, 474
BfuI GTATCC 1 cut(s) 803
BglI GCCNNNNNGGC 1 cut(s) 839
BisI GCNGC 7 cut(s) 272, 297, 640, 834, 854, 990, 1278
BlnI CCTAGG 1 cut(s) 188
BlsI GCNGC 7 cut(s) 273, 298, 641, 835, 855, 991, 1279
Bme1390I CCNGG 2 cut(s) 37, 1092
BmeT110I CYCGRG 1 cut(s) 209
BmiI GGNNCC 4 cut(s) 41, 739, 1000, 1040
BmrFI CCNGG 2 cut(s) 37, 1092
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 3 cut(s) 96, 130, 283
BmuI ACTGGG 1 cut(s) 1056
BpiI GAAGAC 2 cut(s) 190, 1275
BplI GAGNNNNNCTC 2 cut(s) 1148, 1180
BpmI CTGGAG 2 cut(s) 189, 1304
Bpu10I CCTNAGC 1 cut(s) 1107
BpuMI CCSGG 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 1265
BsaJI CCNNGG 4 cut(s) 188, 837, 920, 958
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 2 cut(s) 926, 1108
Bse1I ACTGG 9 cut(s) 172, 244, 394, 439, 821, 1040, 1051, 1223, 1287
Bse21I CCTNAGG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 4 cut(s) 188, 837, 920, 958
BseGI GGATG 2 cut(s) 262, 707
BseLI CCNNNNNNNGG 2 cut(s) 926, 1108
BseMII CTCAG 5 cut(s) 539, 750, 843, 858, 1248
BseNI ACTGG 9 cut(s) 172, 244, 394, 439, 821, 1040, 1051, 1223, 1287
BseRI GAGGAG 2 cut(s) 513, 975
BseSI GKGCMC 2 cut(s) 1043, 1218
BseXI GCAGC 4 cut(s) 283, 283, 865, 976
BseYI CCCAGC 2 cut(s) 60, 173
BshFI GGCC 2 cut(s) 664, 1277
BshNI GGYRCC 3 cut(s) 737, 998, 1038
BsiHKAI GWGCWC 1 cut(s) 1218
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 764, 848
BslI CCNNNNNNNGG 2 cut(s) 926, 1108
BsmAI GTCTC 3 cut(s) 80, 158, 1314
BsmBI CGTCTC 1 cut(s) 1314
BsmFI GGGAC 2 cut(s) 764, 848
BsmI GAATGC 3 cut(s) 18, 574, 1208
BsnI GGCC 2 cut(s) 664, 1277
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 1043, 1218
Bsp143I GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
BspACI CCGC 3 cut(s) 640, 834, 1278
BspANI GGCC 2 cut(s) 664, 1277
BspCNI CTCAG 5 cut(s) 538, 751, 842, 859, 1249
BspLI GGNNCC 4 cut(s) 41, 739, 1000, 1040
BspPI GGATC 5 cut(s) 34, 47, 354, 639, 1178
BspT107I GGYRCC 3 cut(s) 737, 998, 1038
BsrI ACTGG 9 cut(s) 172, 244, 394, 439, 821, 1040, 1051, 1223, 1287
BssECI CCNNGG 4 cut(s) 188, 837, 920, 958
BssMI GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
BssSI CACGAG 1 cut(s) 848
BssT1I CCWWGG 3 cut(s) 188, 837, 920
Bst2BI CACGAG 1 cut(s) 848
Bst2UI CCWGG 1 cut(s) 1092
Bst6I CTCTTC 1 cut(s) 1196
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 3 cut(s) 375, 894, 898
BstDEI CTNAG 7 cut(s) 495, 525, 759, 829, 867, 1107, 1257
BstEII GGTNACC 1 cut(s) 1097
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 2 cut(s) 262, 707
BstKTI GATC 9 cut(s) 42, 208, 349, 647, 702, 873, 1134, 1173, 1189
BstMAI GTCTC 3 cut(s) 80, 158, 1314
BstMBI GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
BstMWI GCNNNNNNNGC 4 cut(s) 140, 571, 839, 1205
BstNI CCWGG 1 cut(s) 1092
BstNSI RCATGY 2 cut(s) 185, 945
BstPI GGTNACC 1 cut(s) 1097
BstSCI CCNGG 2 cut(s) 35, 1090
BstSFI CTRYAG 2 cut(s) 120, 474
BstSLI GKGCMC 2 cut(s) 1043, 1218
BstV1I GCAGC 4 cut(s) 283, 283, 865, 976
BstV2I GAAGAC 2 cut(s) 190, 1275
BstX2I RGATCY 3 cut(s) 39, 346, 644
BstXI CCANNNNNNTGG 1 cut(s) 748
BstYI RGATCY 3 cut(s) 39, 346, 644
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 2 cut(s) 664, 1277
BtsCI GGATG 2 cut(s) 262, 707
BtsIMutI CAGTG 5 cut(s) 324, 565, 756, 1216, 1280
Cac8I GCNNGC 3 cut(s) 375, 894, 898
CaiI CAGNNNCTG 1 cut(s) 866
Csp6I GTAC 6 cut(s) 237, 243, 387, 934, 955, 1222
CviAII CATG 8 cut(s) 83, 182, 802, 901, 937, 942, 1129, 1192
CviQI GTAC 6 cut(s) 237, 243, 387, 934, 955, 1222
DdeI CTNAG 7 cut(s) 495, 525, 759, 829, 867, 1107, 1257
DpnI GATC 9 cut(s) 41, 207, 348, 646, 701, 872, 1133, 1172, 1188
DpnII GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
EaeI YGGCCR 1 cut(s) 1275
Eam1104I CTCTTC 1 cut(s) 1196
EarI CTCTTC 1 cut(s) 1196
Eco130I CCWWGG 3 cut(s) 188, 837, 920
Eco32I GATATC 3 cut(s) 655, 693, 754
Eco57I CTGAAG 1 cut(s) 1332
Eco72I CACGTG 1 cut(s) 1265
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 209
Eco91I GGTNACC 1 cut(s) 1097
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO65I GGTNACC 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 1 cut(s) 1090
EcoRV GATATC 3 cut(s) 655, 693, 754
EcoT14I CCWWGG 3 cut(s) 188, 837, 920
EcoT22I ATGCAT 1 cut(s) 1130
ErhI CCWWGG 3 cut(s) 188, 837, 920
Esp3I CGTCTC 1 cut(s) 1314
FaeI CATG 8 cut(s) 86, 185, 805, 904, 940, 945, 1132, 1195
FaqI GGGAC 2 cut(s) 764, 848
FatI CATG 8 cut(s) 82, 181, 801, 900, 936, 941, 1128, 1191
FbaI TGATCA 1 cut(s) 1131
Fnu4HI GCNGC 7 cut(s) 272, 297, 640, 834, 854, 990, 1278
FokI GGATG 2 cut(s) 249, 694
Fsp4HI GCNGC 7 cut(s) 272, 297, 640, 834, 854, 990, 1278
FspBI CTAG 4 cut(s) 189, 312, 461, 650
GluI GCNGC 7 cut(s) 272, 297, 640, 834, 854, 990, 1278
GsaI CCCAGC 2 cut(s) 64, 177
GsuI CTGGAG 2 cut(s) 189, 1304
HaeIII GGCC 2 cut(s) 664, 1277
HapII CCGG 1 cut(s) 36
Hin1II CATG 8 cut(s) 86, 185, 805, 904, 940, 945, 1132, 1195
HincII GTYRAC 2 cut(s) 254, 1033
HindII GTYRAC 2 cut(s) 254, 1033
HindIII AAGCTT 2 cut(s) 371, 497
HinfI GANTC 2 cut(s) 87, 1062
HpaII CCGG 1 cut(s) 36
HphI GGTGA 5 cut(s) 865, 1109, 1241, 1259, 1352
Hpy166II GTNNAC 3 cut(s) 254, 1033, 1216
Hpy188I TCNGA 4 cut(s) 29, 50, 1116, 1258
Hpy188III TCNNGA 9 cut(s) 77, 209, 266, 356, 441, 584, 658, 766, 1006
Hpy8I GTNNAC 3 cut(s) 254, 1033, 1216
Hpy99I CGWCG 2 cut(s) 101, 230
HpyAV CCTTC 6 cut(s) 528, 590, 1226, 1238, 1307, 1331
HpyCH4IV ACGT 3 cut(s) 747, 1224, 1264
HpyCH4V TGCA 5 cut(s) 134, 818, 1128, 1154, 1216
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 571, 839, 1205
HpyF3I CTNAG 7 cut(s) 495, 525, 759, 829, 867, 1107, 1257
HpySE526I ACGT 3 cut(s) 747, 1224, 1264
Hsp92II CATG 8 cut(s) 86, 185, 805, 904, 940, 945, 1132, 1195
Ksp22I TGATCA 1 cut(s) 1131
Kzo9I GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
LmnI GCTCC 2 cut(s) 64, 170
Lsp1109I GCAGC 4 cut(s) 283, 283, 865, 976
LweI GCATC 3 cut(s) 96, 130, 283
MaeI CTAG 4 cut(s) 189, 312, 461, 650
MaeII ACGT 3 cut(s) 747, 1224, 1264
MaeIII GTNAC 3 cut(s) 914, 1097, 1136
MalI GATC 9 cut(s) 41, 207, 348, 646, 701, 872, 1133, 1172, 1188
MboI GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
MboII GAAGA 7 cut(s) 190, 302, 1213, 1280, 1310, 1340, 1343
MflI RGATCY 3 cut(s) 39, 346, 644
MhlI GDGCHC 2 cut(s) 1043, 1218
MluCI AATT 4 cut(s) 9, 52, 339, 1250
MmeI TCCRAC 3 cut(s) 28, 310, 1103
Mph1103I ATGCAT 1 cut(s) 1130
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 1 cut(s) 984
MslI CAYNNNNRTG 2 cut(s) 594, 746
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 37, 1092
Mva1269I GAATGC 3 cut(s) 18, 574, 1208
MvaI CCWGG 1 cut(s) 1092
MwoI GCNNNNNNNGC 4 cut(s) 140, 571, 839, 1205
NciI CCSGG 1 cut(s) 37
NdeII GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
NlaIII CATG 8 cut(s) 86, 185, 805, 904, 940, 945, 1132, 1195
NlaIV GGNNCC 4 cut(s) 41, 739, 1000, 1040
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 914, 1097
NsiI ATGCAT 1 cut(s) 1130
NspI RCATGY 2 cut(s) 185, 945
PaeR7I CTCGAG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 216
PctI GAATGC 3 cut(s) 18, 574, 1208
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 87, 1062
PkrI GCNGC 7 cut(s) 273, 298, 641, 835, 855, 991, 1279
PmaCI CACGTG 1 cut(s) 1265
PmlI CACGTG 1 cut(s) 1265
Ppu21I YACGTR 1 cut(s) 1265
Psp6I CCWGG 1 cut(s) 1090
PspCI CACGTG 1 cut(s) 1265
PspEI GGTNACC 1 cut(s) 1097
PspFI CCCAGC 2 cut(s) 60, 173
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 4 cut(s) 41, 739, 1000, 1040
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 3 cut(s) 39, 346, 644
RsaI GTAC 6 cut(s) 238, 244, 388, 935, 956, 1223
RsaNI GTAC 6 cut(s) 237, 243, 387, 934, 955, 1222
RseI CAYNNNNRTG 2 cut(s) 594, 746
SaqAI TTAA 1 cut(s) 984
SatI GCNGC 7 cut(s) 272, 297, 640, 834, 854, 990, 1278
Sau3AI GATC 9 cut(s) 39, 205, 346, 644, 699, 870, 1131, 1170, 1186
ScrFI CCNGG 2 cut(s) 37, 1092
SduI GDGCHC 2 cut(s) 1043, 1218
SfaNI GCATC 3 cut(s) 96, 130, 283
SfcI CTRYAG 2 cut(s) 120, 474
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 594, 746
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 9, 52, 339, 1250
SsiI CCGC 3 cut(s) 640, 834, 1278
SspMI CTAG 4 cut(s) 189, 312, 461, 650
StyD4I CCNGG 2 cut(s) 35, 1090
StyI CCWWGG 3 cut(s) 188, 837, 920
TaiI ACGT 3 cut(s) 750, 1227, 1267
TaqI TCGA 5 cut(s) 78, 210, 225, 657, 1173
TasI AATT 4 cut(s) 9, 52, 339, 1250
TatI WGTACW 2 cut(s) 386, 933
TauI GCSGC 3 cut(s) 642, 836, 1280
TfiI GAWTC 2 cut(s) 87, 1062
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 5 cut(s) 331, 565, 763, 1223, 1287
TseFI GTSAC 2 cut(s) 914, 1097
TseI GCWGC 4 cut(s) 271, 296, 853, 989
Tsp45I GTSAC 2 cut(s) 914, 1097
TspDTI ATGAA 5 cut(s) 11, 696, 790, 1341, 1350
TspGWI ACGGA 4 cut(s) 114, 498, 942, 1183
TspRI CASTG 5 cut(s) 331, 565, 763, 1223, 1287
VneI GTGCAC 1 cut(s) 1214
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 2 cut(s) 52, 1250
XceI RCATGY 2 cut(s) 185, 945
XhoI CTCGAG 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 4 cut(s) 189, 312, 461, 650
Zsp2I ATGCAT 1 cut(s) 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.