FvH4_3g45490

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014912
Physical Location & Seq
Reverse (-)
37712228 .. 37716550
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45490.t1

Sequence Viewer

Length: 1353 bp
ATGAGAGAGATCATAAGCATTCATATTGGGCAGGCTGGAATTCAGGTGGGGAATTCATGCTGGGAGCTTTATTGTCTTGAGCATGGGATTCAGCCTGATGGTCAGATGCCTAGTGACAACACTATAGGTGTTGGAAGAGATGCTTTCAATACCTTCTTCAGTGAGACTGGATCGGGCAAGCATGTCCCTAGGGCCATATTTGTTGATCTGGAACCAACTGTTATTGATGAAGTTAGGACCGGCTCTTACCGCCAACTATTCCACCCCGAGCAGCTCATTTCTGGTAAAGAAGATGCCGCTAATAACTTTGCAAGAGGACATTATACAGTTGGAAAGGAAATTGTGGATCTCTGCCTTGATCGAGTGAGGAAGTTGGCTGATAATTGCACTGGTTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGTACTGGTTCTGGTCTGGGGTCCTTGTTGTTAGAACGTTTGTCTGTGGATTATGGGAAAAAGTCAAAGCTCGGATTCACCATCTATCCTTCTCCCCAGGTTTCAACAGCAGTTGTCGAGCCTTACAACAGTGTTCTTTCTACTCATGCTCTCCTTGAACACACAGATGTATCTGTGCTCTTGGACAATGAAGCTATCTACGACATTTGCAGAAGATCCCTAGACATTGAGAGACCAACTTATACTAATTTGAACAGATTGATATCACAAGTCATTTCATCCTTGACAACATCATTGAGGTTTGATGGAGCCATCAATGTAGATATCACAGAGTTCCAGACTAACCTTGTACCATATCCGCGTATCCATTTCATGCTCTCCTCATATGCTCCTGTTATCTCAGCTGCAAAGGCTTACCATGAGCAGATCTCTGTTCCTGAGATCACCAATGCAGTTTTTGAGCCCTCAAGCATGATGGCAAAGTGTGATCCTAGGCATGGCAAGTACATGGCATGCTGCTTAATGTACAGAGGAGATGTTGTTCCCAAGGATGTTAACGCTGCTGTAGCAACTATCAAGACAAAAAGGACTGTACAGTTTGTTGACTGGTGCCCTACTGGCTTCAAGTGCGGTATTAACTATCAACCTCCAACAGTTGTACCTGGGGGTGATCTAGCCAAGGTGCAGCGAGCAGTTTGCATGATCAGCAACAACACAGCAGTGGCAGAGGTGTTCTCACGCATTGACCACAAGTTTGATCTCATGTACTCAAAGAGGGCATTTGTTCACTGGTATGTTGGTGAAGGCATGGAAGAAGGTGAGTTCTCAGAAGCCCGTGAAGATCTGGCTGCTCTTGAGAAGGATTATGAGGAAGTCGGTGCTGAAGGTGTAGATGATGAAGAGGGGGGAAGTGAAGAGTACTGA

Protein Analysis

451

Amino Acids

49.69

Weight (kDa)

5.04

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 213 8.2e-63 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 263 - 392 7.2e-52 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19770 AT5G19780
fragaria_vesca FvH4_3g45490
malus_domestica MD03G1004400.v1.1 MD11G1005100.v1.1
prunus_persica Prupe.6G004100_v2.0.a1 Prupe.6G004100_v2.0.a1
pyrus_communis pycom03g00450 pycom11g00410
rosa_chinensis RchiOBHm_Chr5g0083281
rosa_laevigata RLG00000037026
rosa_multiflora Rmu_sc0011792.1_g000008
rosa_roxburghii Rroxscaffold_1G00001210
rosa_rugosa Rorug05G0484000
rosa_samantha Rh5BG560700
rosa_wichuraiana Rw5G049950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1038
AccII CGCG 1 cut(s) 790
AciI CCGC 4 cut(s) 250, 297, 788, 1059
AclI AACGTT 1 cut(s) 466
AclWI GGATC 4 cut(s) 178, 354, 639, 911
AcsI RAATTY 2 cut(s) 39, 52
AcuI CTGAAG 2 cut(s) 142, 1332
AfaI GTAC 8 cut(s) 433, 780, 935, 956, 1023, 1089, 1196, 1349
AfiI CCNNNNNNNGG 1 cut(s) 926
AgsI TTSAA 6 cut(s) 148, 415, 534, 587, 682, 1054
AjnI CCWGG 2 cut(s) 525, 1090
AleI CACNNNNGTG 1 cut(s) 1148
AloI GAACNNNNNNTCC 2 cut(s) 954, 986
AluBI AGCT 5 cut(s) 67, 274, 499, 623, 833
AluI AGCT 5 cut(s) 67, 274, 499, 623, 833
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 158, 655
AlwI GGATC 4 cut(s) 178, 354, 639, 911
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 6 cut(s) 271, 833, 945, 989, 1114, 1277
ApoI RAATTY 2 cut(s) 39, 52
ArsI GACNNNNNNTTYG 2 cut(s) 1166, 1198
AspA2I CCTAGG 2 cut(s) 188, 920
AspS9I GGNCC 3 cut(s) 192, 237, 450
AsuHPI GGTGA 5 cut(s) 499, 865, 1109, 1241, 1259
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 237, 450
AvrII CCTAGG 2 cut(s) 188, 920
BaeGI GKGCMC 1 cut(s) 1043
BaeI ACNNNNGTAYC 4 cut(s) 582, 615, 1071, 1104
BanI GGYRCC 1 cut(s) 1038
BanII GRGCYC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 6 cut(s) 283, 820, 932, 976, 1126, 1264
BccI CCATC 5 cut(s) 92, 518, 728, 749, 898
BcgI CGANNNNNNTGC 2 cut(s) 1107, 1141
BciT130I CCWGG 2 cut(s) 527, 1092
BciVI GTATCC 1 cut(s) 803
BclI TGATCA 1 cut(s) 1131
BcoDI GTCTC 2 cut(s) 158, 655
BfaI CTAG 5 cut(s) 111, 189, 650, 921, 1103
BfmI CTRYAG 2 cut(s) 123, 993
BfuI GTATCC 1 cut(s) 803
BglI GCCNNNNNGGC 1 cut(s) 1047
BglII AGATCT 2 cut(s) 855, 1270
BisI GCNGC 7 cut(s) 272, 297, 834, 946, 990, 1115, 1278
BlnI CCTAGG 2 cut(s) 188, 920
BlsI GCNGC 7 cut(s) 273, 298, 835, 947, 991, 1116, 1279
BmcAI AGTACT 1 cut(s) 1349
Bme1390I CCNGG 2 cut(s) 527, 1092
Bme18I GGWCC 2 cut(s) 237, 450
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 3 cut(s) 192, 237, 450
BmiI GGNNCC 4 cut(s) 213, 451, 739, 1040
BmrFI CCNGG 2 cut(s) 527, 1092
BmsI GCATC 3 cut(s) 96, 130, 283
BplI GAGNNNNNCTC 4 cut(s) 842, 874, 1148, 1180
BpuEI CTTGAG 3 cut(s) 98, 880, 1304
BsaBI GATNNNNATC 1 cut(s) 691
BsaI GGTCTC 1 cut(s) 655
BsaJI CCNNGG 6 cut(s) 188, 525, 920, 975, 1091, 1107
BsaXI ACNNNNNCTCC 2 cut(s) 954, 984
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 6 cut(s) 172, 394, 439, 1040, 1051, 1223
Bse8I GATNNNNATC 1 cut(s) 691
BseBI CCWGG 2 cut(s) 527, 1092
BseDI CCNNGG 6 cut(s) 188, 525, 920, 975, 1091, 1107
BseGI GGATG 2 cut(s) 707, 985
BseJI GATNNNNATC 1 cut(s) 691
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMII CTCAG 3 cut(s) 843, 858, 1269
BseNI ACTGG 6 cut(s) 172, 394, 439, 1040, 1051, 1223
BseRI GAGGAG 2 cut(s) 799, 975
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 6 cut(s) 283, 820, 932, 976, 1126, 1264
BseYI CCCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 1133
Bsh1236I CGCG 1 cut(s) 790
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 1038
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 2 cut(s) 158, 655
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 655
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 609, 894, 1043
Bsp1407I TGTACA 2 cut(s) 954, 1021
BspACI CCGC 4 cut(s) 250, 297, 788, 1059
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 3 cut(s) 842, 859, 1268
BspFNI CGCG 1 cut(s) 790
BspLI GGNNCC 4 cut(s) 213, 451, 739, 1040
BspPI GGATC 4 cut(s) 178, 354, 639, 911
BspT107I GGYRCC 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 239
BsrGI TGTACA 2 cut(s) 954, 1021
BsrI ACTGG 6 cut(s) 172, 394, 439, 1040, 1051, 1223
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 6 cut(s) 188, 525, 920, 975, 1091, 1107
BssT1I CCWWGG 4 cut(s) 188, 920, 975, 1107
Bst2UI CCWGG 2 cut(s) 527, 1092
Bst4CI ACNGT 6 cut(s) 220, 328, 560, 1021, 1026, 1084
Bst6I CTCTTC 3 cut(s) 130, 1323, 1338
BstAUI TGTACA 2 cut(s) 954, 1021
BstC8I GCNNGC 4 cut(s) 33, 179, 943, 1119
BstDEI CTNAG 3 cut(s) 829, 867, 1255
BstF5I GGATG 2 cut(s) 707, 985
BstFNI CGCG 1 cut(s) 790
BstMAI GTCTC 2 cut(s) 158, 655
BstMWI GCNNNNNNNGC 6 cut(s) 249, 839, 995, 1047, 1056, 1134
BstNI CCWGG 2 cut(s) 527, 1092
BstNSI RCATGY 2 cut(s) 185, 945
BstSCI CCNGG 2 cut(s) 525, 1090
BstSFI CTRYAG 2 cut(s) 123, 993
BstSLI GKGCMC 1 cut(s) 1043
BstUI CGCG 1 cut(s) 790
BstV1I GCAGC 6 cut(s) 283, 820, 932, 976, 1126, 1264
BstX2I RGATCY 4 cut(s) 346, 644, 855, 1270
BstYI RGATCY 4 cut(s) 346, 644, 855, 1270
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 707, 985
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 5 cut(s) 166, 387, 565, 1155, 1216
Cac8I GCNNGC 4 cut(s) 33, 179, 943, 1119
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 192, 237, 450
Csp6I GTAC 8 cut(s) 432, 779, 934, 955, 1022, 1088, 1195, 1348
CviQI GTAC 8 cut(s) 432, 779, 934, 955, 1022, 1088, 1195, 1348
DdeI CTNAG 3 cut(s) 829, 867, 1255
Eam1104I CTCTTC 3 cut(s) 130, 1323, 1338
EarI CTCTTC 3 cut(s) 130, 1323, 1338
Eco130I CCWWGG 4 cut(s) 188, 920, 975, 1107
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 655
Eco32I GATATC 2 cut(s) 693, 754
Eco47I GGWCC 2 cut(s) 237, 450
Eco57I CTGAAG 2 cut(s) 142, 1332
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 450
EcoRI GAATTC 2 cut(s) 39, 52
EcoRII CCWGG 2 cut(s) 525, 1090
EcoRV GATATC 2 cut(s) 693, 754
EcoT14I CCWWGG 4 cut(s) 188, 920, 975, 1107
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 4 cut(s) 188, 920, 975, 1107
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FaqI GGGAC 1 cut(s) 170
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 1 cut(s) 1131
Fnu4HI GCNGC 7 cut(s) 272, 297, 834, 946, 990, 1115, 1278
FokI GGATG 2 cut(s) 694, 992
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 7 cut(s) 272, 297, 834, 946, 990, 1115, 1278
FspBI CTAG 5 cut(s) 111, 189, 650, 921, 1103
GluI GCNGC 7 cut(s) 272, 297, 834, 946, 990, 1115, 1278
GsaI CCCAGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 240
HincII GTYRAC 2 cut(s) 985, 1033
HindII GTYRAC 2 cut(s) 985, 1033
HinfI GANTC 2 cut(s) 88, 504
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 1 cut(s) 240
HphI GGTGA 5 cut(s) 499, 865, 1109, 1241, 1259
Hpy166II GTNNAC 4 cut(s) 395, 985, 1033, 1216
Hpy188I TCNGA 3 cut(s) 105, 503, 1258
Hpy188III TCNNGA 6 cut(s) 77, 209, 766, 866, 1006, 1283
Hpy8I GTNNAC 4 cut(s) 395, 985, 1033, 1216
HpyAV CCTTC 6 cut(s) 163, 528, 1226, 1238, 1282, 1307
HpyCH4III ACNGT 6 cut(s) 220, 328, 560, 1021, 1026, 1084
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 7 cut(s) 311, 387, 639, 836, 881, 1114, 1128
HpyF10VI GCNNNNNNNGC 6 cut(s) 249, 839, 995, 1047, 1056, 1134
HpyF3I CTNAG 3 cut(s) 829, 867, 1255
HpySE526I ACGT 1 cut(s) 466
Ksp22I TGATCA 1 cut(s) 1131
KspAI GTTAAC 1 cut(s) 985
LmnI GCTCC 3 cut(s) 64, 737, 823
Lsp1109I GCAGC 6 cut(s) 283, 820, 932, 976, 1126, 1264
LweI GCATC 3 cut(s) 96, 130, 283
MaeI CTAG 5 cut(s) 111, 189, 650, 921, 1103
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 7 cut(s) 147, 148, 302, 654, 1253, 1280, 1340
MflI RGATCY 4 cut(s) 346, 644, 855, 1270
MhlI GDGCHC 3 cut(s) 609, 894, 1043
MluCI AATT 5 cut(s) 39, 52, 339, 382, 676
MmeI TCCRAC 3 cut(s) 112, 310, 1103
MseI TTAA 3 cut(s) 950, 984, 1065
MslI CAYNNNNRTG 3 cut(s) 594, 1148, 1221
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 527, 1092
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 2 cut(s) 527, 1092
MvnI CGCG 1 cut(s) 790
MwoI GCNNNNNNNGC 6 cut(s) 249, 839, 995, 1047, 1056, 1134
NdeI CATATG 1 cut(s) 814
NlaIV GGNNCC 4 cut(s) 213, 451, 739, 1040
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 2 cut(s) 185, 945
OliI CACNNNNGTG 1 cut(s) 1148
PaeI GCATGC 1 cut(s) 945
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 88, 504
PkrI GCNGC 7 cut(s) 273, 298, 835, 947, 991, 1116, 1279
PpuMI RGGWCCY 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 466
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 525, 1090
PspFI CCCAGC 1 cut(s) 60
PspGI CCWGG 2 cut(s) 525, 1090
PspN4I GGNNCC 4 cut(s) 213, 451, 739, 1040
PspPI GGNCC 3 cut(s) 192, 237, 450
PspPPI RGGWCCY 1 cut(s) 450
PsuI RGATCY 4 cut(s) 346, 644, 855, 1270
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 8 cut(s) 433, 780, 935, 956, 1023, 1089, 1196, 1349
RsaNI GTAC 8 cut(s) 432, 779, 934, 955, 1022, 1088, 1195, 1348
RseI CAYNNNNRTG 3 cut(s) 594, 1148, 1221
SaqAI TTAA 3 cut(s) 950, 984, 1065
SatI GCNGC 7 cut(s) 272, 297, 834, 946, 990, 1115, 1278
Sau96I GGNCC 3 cut(s) 192, 237, 450
ScaI AGTACT 1 cut(s) 1349
ScrFI CCNGG 2 cut(s) 527, 1092
SduI GDGCHC 3 cut(s) 609, 894, 1043
SfaNI GCATC 3 cut(s) 96, 130, 283
SfcI CTRYAG 2 cut(s) 123, 993
SinI GGWCC 2 cut(s) 237, 450
SmiMI CAYNNNNRTG 3 cut(s) 594, 1148, 1221
SmlI CTYRAG 3 cut(s) 77, 895, 1283
SmoI CTYRAG 3 cut(s) 77, 895, 1283
SphI GCATGC 1 cut(s) 945
Sse9I AATT 5 cut(s) 39, 52, 339, 382, 676
SsiI CCGC 4 cut(s) 250, 297, 788, 1059
SspMI CTAG 5 cut(s) 111, 189, 650, 921, 1103
StyD4I CCNGG 2 cut(s) 525, 1090
StyI CCWWGG 4 cut(s) 188, 920, 975, 1107
TaaI ACNGT 6 cut(s) 220, 328, 560, 1021, 1026, 1084
TaiI ACGT 1 cut(s) 469
TaqI TCGA 2 cut(s) 361, 546
TasI AATT 5 cut(s) 39, 52, 339, 382, 676
TatI WGTACW 5 cut(s) 933, 954, 1021, 1194, 1347
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 2 cut(s) 88, 504
Tru1I TTAA 3 cut(s) 950, 984, 1065
Tru9I TTAA 3 cut(s) 950, 984, 1065
TscAI CASTG 5 cut(s) 166, 394, 565, 1155, 1223
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 6 cut(s) 271, 833, 945, 989, 1114, 1277
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 7 cut(s) 11, 45, 243, 633, 696, 790, 1341
TspRI CASTG 5 cut(s) 166, 394, 565, 1155, 1223
VpaK11BI GGWCC 2 cut(s) 237, 450
XapI RAATTY 2 cut(s) 39, 52
XceI RCATGY 2 cut(s) 185, 945
XmaJI CCTAGG 2 cut(s) 188, 920
XspI CTAG 5 cut(s) 111, 189, 650, 921, 1103
ZrmI AGTACT 1 cut(s) 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.