AT5G19830

Peptidyl-tRNA hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009564
Physical Location & Seq
Forward (+)
6703082 .. 6705249
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19830.1

Sequence Viewer

Length: 660 bp
ATGCTGAGTAGGTTGTCAAGGCGTTGCTACTGCACTTCTTCTGTTCATCGGCCATGGCTGTTTCTAGGACTGGGCAATCCAGGTGACAAATACAAAGGAACTAGACACAACATTGGATTCGAAATGATTGATGTTTTCGCTGAGTCAGTGGGGATTCAAATGAACTTGGTAAATTTCAAGGCTATAATGGGACAAGGTTTCGTGGCAGATCTTCCCGTCATCCTTGCAAAACCGCAAACCTACATGAACTTGAGCGGTGAATCAAGTGGACCTCTCGCAGCTTATTACAAGTTACCTCTCAATCGTGTGCTTGTGGTTCATGATGACATGCAATTGCCATGTGGTGTTCTTCGTCTTCAAGAAAAAGGAGGCCATGGATGTCACAACGGGTTAAAAAGTGTAATGAACCATTTCCGAGGCAACAGGGAATTTGCAAGGCTACGAATCGGAATTGGAAAGCCTCCGGGACAAATGGACCCAAAGGCGTTCTTGTTGCAGAAGTTCAGCATGCCAGCTCGTGAACGGATGGATAAAGCTTTAGCAGAAGGGGTGGATGCTCTGAAGCTCGTCTTGGCTAAAGACTTTGGAGAAAGCTGGAGATTGTTCAATGTGGAACAGAAGTACAAACACTTAAAACAACACACAATACTATCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pept_tRNA_hydro

Protein Analysis

219

Amino Acids

24.6

Weight (kDa)

9.72

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 20 - 199 1.7e-59 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 255
AciI CCGC 2 cut(s) 233, 255
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 2 cut(s) 172, 428
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 1 cut(s) 623
AgsI TTSAA 4 cut(s) 158, 178, 359, 607
AjnI CCWGG 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 6 cut(s) 281, 515, 536, 565, 594, 656
AluI AGCT 6 cut(s) 281, 515, 536, 565, 594, 656
AoxI GGCC 2 cut(s) 50, 370
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 172, 428
Asp700I GAANNNNTTC 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 269, 475
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 95, 269
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 2 cut(s) 269, 475
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 520
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 465
BfaI CTAG 2 cut(s) 65, 102
BglII AGATCT 1 cut(s) 208
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 81, 465
Bme18I GGWCC 2 cut(s) 269, 475
BmgT120I GGNCC 2 cut(s) 269, 475
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 81, 465
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 616
Bpu14I TTCGAA 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 53, 373, 415
Bse1I ACTGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 53, 373, 415
BseGI GGATG 4 cut(s) 219, 383, 531, 559
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 16
BshFI GGCC 2 cut(s) 52, 372
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 2 cut(s) 204, 480
BsmFI GGGAC 2 cut(s) 204, 480
BsnI GGCC 2 cut(s) 52, 372
Bsp119I TTCGAA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 208
Bsp19I CCATGG 2 cut(s) 53, 373
BspACI CCGC 2 cut(s) 233, 255
BspANI GGCC 2 cut(s) 52, 372
BspCNI CTCAG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 477
BspT104I TTCGAA 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 255
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 53, 373, 415
BssMI GATC 1 cut(s) 208
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 53, 373
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 509, 513
BstDEI CTNAG 2 cut(s) 5, 141
BstDSI CCRYGG 2 cut(s) 53, 373
BstF5I GGATG 4 cut(s) 219, 383, 531, 559
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 2 cut(s) 331, 511
BstSCI CCNGG 2 cut(s) 79, 463
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 2 cut(s) 52, 372
BtgI CCRYGG 2 cut(s) 53, 373
BtsCI GGATG 4 cut(s) 219, 383, 531, 559
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 509, 513
CciI TCATGA 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 269, 475
Csp6I GTAC 1 cut(s) 622
CviAII CATG 7 cut(s) 54, 244, 320, 328, 339, 374, 508
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 2 cut(s) 5, 141
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 53, 373
Eco47I GGWCC 2 cut(s) 269, 475
Eco57I CTGAAG 1 cut(s) 581
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 2 cut(s) 53, 373
ErhI CCWWGG 2 cut(s) 53, 373
FaeI CATG 7 cut(s) 57, 247, 323, 331, 342, 377, 511
FaiI YATR 8 cut(s) 55, 185, 245, 321, 329, 340, 375, 509
FalI AAGNNNNNCTT 4 cut(s) 473, 505, 554, 586
FaqI GGGAC 2 cut(s) 204, 480
FatI CATG 7 cut(s) 53, 243, 319, 327, 338, 373, 507
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 4 cut(s) 206, 390, 538, 566
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 65, 102
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 2 cut(s) 52, 372
HapII CCGG 1 cut(s) 464
Hin1II CATG 7 cut(s) 57, 247, 323, 331, 342, 377, 511
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 5 cut(s) 117, 143, 154, 260, 444
HpaII CCGG 1 cut(s) 464
HphI GGTGA 2 cut(s) 95, 269
Hpy166II GTNNAC 2 cut(s) 269, 521
Hpy188I TCNGA 3 cut(s) 416, 449, 561
Hpy188III TCNNGA 3 cut(s) 320, 359, 518
Hpy8I GTNNAC 2 cut(s) 269, 521
HpyAV CCTTC 1 cut(s) 539
HpyCH4V TGCA 5 cut(s) 33, 227, 331, 434, 496
HpyF3I CTNAG 2 cut(s) 5, 141
Hsp92II CATG 7 cut(s) 57, 247, 323, 331, 342, 377, 511
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 7 cut(s) 56, 66, 93, 409, 477, 525, 580
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 65, 102
MaeIII GTNAC 3 cut(s) 83, 291, 380
MalI GATC 1 cut(s) 210
MbiI CCGCTC 1 cut(s) 255
MboI GATC 1 cut(s) 208
MboII GAAGA 4 cut(s) 30, 203, 341, 347
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 1 cut(s) 208
MluCI AATT 4 cut(s) 172, 332, 428, 450
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 5 cut(s) 282, 306, 362, 410, 471
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 2 cut(s) 392, 632
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 81, 465
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 81
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 2 cut(s) 53, 373
NdeII GATC 1 cut(s) 208
NlaIII CATG 7 cut(s) 57, 247, 323, 331, 342, 377, 511
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 83, 380
NspI RCATGY 2 cut(s) 331, 511
NspV TTCGAA 1 cut(s) 120
PaeI GCATGC 1 cut(s) 511
PagI TCATGA 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 4 cut(s) 117, 154, 260, 444
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 2 cut(s) 269, 475
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
SaqAI TTAA 2 cut(s) 392, 632
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 269, 475
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 81, 465
SfaNI GCATC 1 cut(s) 544
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 2 cut(s) 269, 475
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SphI GCATGC 1 cut(s) 511
Sse9I AATT 4 cut(s) 172, 332, 428, 450
SsiI CCGC 2 cut(s) 233, 255
SspMI CTAG 2 cut(s) 65, 102
StyD4I CCNGG 2 cut(s) 79, 463
StyI CCWWGG 2 cut(s) 53, 373
TaqI TCGA 1 cut(s) 120
TasI AATT 4 cut(s) 172, 332, 428, 450
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 4 cut(s) 117, 154, 260, 444
Tru1I TTAA 2 cut(s) 392, 632
Tru9I TTAA 2 cut(s) 392, 632
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 83, 380
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 2 cut(s) 83, 380
TspDTI ATGAA 5 cut(s) 35, 176, 260, 308, 419
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 269, 475
XapI RAATTY 2 cut(s) 172, 428
XceI RCATGY 2 cut(s) 331, 511
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 2 cut(s) 65, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.