Rroxscaffold_1G00001230

Belongs to the PTH family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009564
Physical Location & Seq
Forward (+)
1674517 .. 1677045
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001230.1

Sequence Viewer

Length: 711 bp
ATGTGTCGTTGTGACTTGTCTGATTCTCCGGGCATACCTGAGATTGGCTCAGTTTTAGAGAATAAGATGATTAGTAGGTTAAGTAGGCGTTACTTTTGCTCTGATGCTCCGCGACCGTGGCTGTTTGTGGGTTTGGGCAATCCCGGCGATAAGTACAAGGCAACCAGACACAATGTGGGGTTTGAGATGATTGATGTTTTCGCTCAATCGCAAGGGATAGCCATGAATAGAGTCCATTGCAAAGCTATATTCGGGCAAGGTTTTGTAGATGAAGTCCCTGTTTTTCTAGCAAAGCCTCAAACGTACATGAACCTGAGTGGTGAATCGACGGGACCGCTTGCTGCTTATTATAAGCTACCTCTCAATCGTGTGCTAGTGTTCCATGATGACATGAACTTACCGTGTGGGGTACTCCGTCTTAACCCAAATGGAGGTCATGGAAGCCACAGTGGGCTGAAGAGTGTGTTCTATAATTTTCGAGGGAACAGAGAATTTCCTCGTCTAAGAATTGGTATTGGAAGGCCTCCTGGTCAAATGGATCCAAAAGCATATTTGCTCCAAAAATTTAATGCAACAGCTCAAGGACGAATCGACGCTGCTTTACAAGAGGGAGTCGATGTACTGAAGTTCCTACTGTCCAAAGGGCTGAACGAGAGTGCAAGACGCTTCAACACAGTGCAAAAGTACAAGCACTTGACCACGGCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pept_tRNA_hydro

Protein Analysis

236

Amino Acids

26.28

Weight (kDa)

9.6

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 41 - 224 1.1e-58 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 110, 335
AclWI GGATC 2 cut(s) 533, 546
AcsI RAATTY 2 cut(s) 491, 563
AcuI CTGAAG 2 cut(s) 476, 644
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 5 cut(s) 155, 305, 411, 621, 686
AfiI CCNNNNNNNGG 2 cut(s) 44, 431
AgsI TTSAA 1 cut(s) 670
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 3 cut(s) 245, 355, 578
AluI AGCT 3 cut(s) 245, 355, 578
AlwI GGATC 2 cut(s) 533, 546
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 341, 596
ApoI RAATTY 2 cut(s) 491, 563
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 2 cut(s) 30, 144
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 332
BamHI GGATCC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 328, 583
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 2 cut(s) 30, 144
BfaI CTAG 2 cut(s) 287, 374
BisI GCNGC 2 cut(s) 342, 597
BlsI GCNGC 2 cut(s) 343, 598
Bme1390I CCNGG 3 cut(s) 30, 144, 528
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 2 cut(s) 333, 540
BmrFI CCNGG 3 cut(s) 30, 144, 528
BmsI GCATC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 2 cut(s) 30, 144
BsaJI CCNNGG 2 cut(s) 116, 699
BsaXI ACNNNNNCTCC 2 cut(s) 603, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 431
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 116, 699
BseLI CCNNNNNNNGG 2 cut(s) 44, 431
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 3 cut(s) 30, 63, 305
BseXI GCAGC 2 cut(s) 328, 583
Bsh1236I CGCG 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 1 cut(s) 523
BsiEI CGRYCG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 29, 144
BslFI GGGAC 2 cut(s) 260, 345
BslI CCNNNNNNNGG 2 cut(s) 44, 431
BsmFI GGGAC 2 cut(s) 260, 345
BsnI GGCC 1 cut(s) 523
Bsp143I GATC 1 cut(s) 538
BspACI CCGC 2 cut(s) 110, 335
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 3 cut(s) 31, 62, 306
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 333, 540
BspPI GGATC 2 cut(s) 533, 546
BsrDI GCAATG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 116, 699
BssMI GATC 1 cut(s) 538
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 5 cut(s) 117, 402, 449, 636, 676
Bst6I CTCTTC 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 39, 49, 314, 503
BstDSI CCRYGG 2 cut(s) 116, 699
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 1 cut(s) 541
BstMBI GATC 1 cut(s) 538
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 118, 144
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 28, 142, 526
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 328, 583
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 523
BtgI CCRYGG 2 cut(s) 116, 699
BtsIMutI CAGTG 2 cut(s) 454, 681
Cac8I GCNNGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 2 cut(s) 602, 672
Csp6I GTAC 5 cut(s) 154, 304, 410, 620, 685
CviAII CATG 6 cut(s) 223, 307, 383, 391, 437, 708
CviQI GTAC 5 cut(s) 154, 304, 410, 620, 685
DdeI CTNAG 4 cut(s) 39, 49, 314, 503
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
DraIII CACNNNGTG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 332
Eco57I CTGAAG 2 cut(s) 476, 644
EcoRII CCWGG 1 cut(s) 526
FaeI CATG 6 cut(s) 226, 310, 386, 394, 440, 711
FaqI GGGAC 2 cut(s) 260, 345
FatI CATG 6 cut(s) 222, 306, 382, 390, 436, 707
Fnu4HI GCNGC 2 cut(s) 342, 597
Fsp4HI GCNGC 2 cut(s) 342, 597
FspBI CTAG 2 cut(s) 287, 374
GluI GCNGC 2 cut(s) 342, 597
HaeIII GGCC 1 cut(s) 523
HapII CCGG 2 cut(s) 29, 144
HgaI GACGC 2 cut(s) 602, 672
Hin1II CATG 6 cut(s) 226, 310, 386, 394, 440, 711
HinfI GANTC 5 cut(s) 23, 231, 323, 588, 612
HpaII CCGG 2 cut(s) 29, 144
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 22, 103
Hpy99I CGWCG 2 cut(s) 331, 596
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 5 cut(s) 117, 402, 449, 636, 676
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 4 cut(s) 240, 572, 659, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 144
HpyF3I CTNAG 4 cut(s) 39, 49, 314, 503
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 6 cut(s) 226, 310, 386, 394, 440, 711
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 2 cut(s) 112, 561
LpnPI CCDG 8 cut(s) 42, 51, 157, 178, 291, 326, 513, 540
Lsp1109I GCAGC 2 cut(s) 328, 583
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 287, 374
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 11, 89
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 1 cut(s) 469
MflI RGATCY 1 cut(s) 538
MluCI AATT 4 cut(s) 472, 491, 507, 563
MlyI GAGTC 2 cut(s) 240, 621
MnlI CCTC 7 cut(s) 306, 369, 425, 473, 507, 534, 601
MseI TTAA 3 cut(s) 80, 420, 567
MspI CCGG 2 cut(s) 29, 144
MspR9I CCNGG 3 cut(s) 30, 144, 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 118, 144
NciI CCSGG 2 cut(s) 30, 144
NdeII GATC 1 cut(s) 538
NlaIII CATG 6 cut(s) 226, 310, 386, 394, 440, 711
NlaIV GGNNCC 2 cut(s) 333, 540
NmuCI GTSAC 1 cut(s) 11
PceI AGGCCT 1 cut(s) 523
PfeI GAWTC 3 cut(s) 23, 323, 588
PkrI GCNGC 2 cut(s) 343, 598
PleI GAGTC 2 cut(s) 239, 620
PpsI GAGTC 2 cut(s) 239, 620
PsiI TTATAA 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 333, 540
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 5 cut(s) 155, 305, 411, 621, 686
RsaNI GTAC 5 cut(s) 154, 304, 410, 620, 685
SaqAI TTAA 3 cut(s) 80, 420, 567
SatI GCNGC 2 cut(s) 342, 597
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 2 cut(s) 240, 621
ScrFI CCNGG 3 cut(s) 30, 144, 528
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 4 cut(s) 472, 491, 507, 563
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 2 cut(s) 110, 335
SspMI CTAG 2 cut(s) 287, 374
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 28, 142, 526
TaaI ACNGT 5 cut(s) 117, 402, 449, 636, 676
TaiI ACGT 1 cut(s) 305
TaqI TCGA 4 cut(s) 326, 478, 591, 615
TasI AATT 4 cut(s) 472, 491, 507, 563
TatI WGTACW 3 cut(s) 153, 619, 684
TfiI GAWTC 3 cut(s) 23, 323, 588
Tru1I TTAA 3 cut(s) 80, 420, 567
Tru9I TTAA 3 cut(s) 80, 420, 567
TscAI CASTG 2 cut(s) 454, 681
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 341, 596
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 239, 285, 323, 407
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 454, 681
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 2 cut(s) 491, 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 2 cut(s) 287, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.