Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009564

Physical Location & Seq

Genomic Coordinates Forward (+)

462121 .. 464026

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G004600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTTAATAGGTTGGGTAGGCGTTACTTTTGCACTGCTGCTCCACAGCCGTGGCTATTTGTGGGTTTGGGCAATCCCGGCAATAAGTACAAAGGAACTAGGCACAATCAGGTGGGGTTTGAGATGATTGATGTTTTTGCTAATTCTCAAGGAATTGAAATGAGCACGGTGCATTGCAAAGCTATCTTCGGGCAAGGTTTCGTTGGTGAAGTTCCTGTTTTTCTTGCAAAGCCTCAAACTTACATGAATTTGAGTGGTGAATCTACAGGACCACTTGCTGCTTATTATAAGCTACCTCTCAATCGTGTGCTAGTGTTCCACGATGACATGAACTTACCATGTGGGGTACTTCGTCTTCACCCAAATGGAGGTCATGGATGCCACAATGGGGTGAAGAGTGTAATGTATCACTTTCGTGGGAACAGAGAATTTCCTCGGCTAAGAATCGGTATCGGGAGGCCTCCTGGTCAAATGGATCCCAAGGCATTCTTGCTCCAGAAATTTAATGCAACGGCTCAAGGACGAATTGATGCTGCTTTACAAGAGGGAGTTGATATATTGAAGGTGCTGTTATCTGAAGGTTTGGCAGAGAGTGCGAGACGCTTCAACTCAGAGCAAAAATACAAGCATATGAGATTAGAGACTACAATGGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

220

Amino Acids

24.42

Weight (kDa)

9.66

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19830
fragaria_vesca	FvH4_3g45460 FvH4_3g45460 FvH4_3g45460 FvH4_6g18020
malus_domestica	MD03G1004800.v1.1 MD11G1006400.v1.1 MD11G1007300.v1.1 MD11G1007400.v1.1
prunus_persica	Prupe.6G004600_v2.0.a1
pyrus_communis	pycom03g00510
rosa_chinensis	RchiOBHm_Chr5g0083251
rosa_laevigata	RLG00000037023
rosa_multiflora	Rmu_sc0039935.1_g000001 Rmu_sc0040082.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001230
rosa_rugosa	Rorug05G0483700
rosa_samantha	Rh5AG533100 Rh5BG560400 Rh5CG583100 Rh5DG569700
rosa_wichuraiana	Rw5G049980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AclWI	GGATC	2 cut(s)	470, 483
AcsI	RAATTY	3 cut(s)	247, 428, 500
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	2 cut(s)	89, 348
AfiI	CCNNNNNNNGG	2 cut(s)	368, 388
AgsI	TTSAA	3 cut(s)	158, 562, 607
AjnI	CCWGG	1 cut(s)	463
AleI	CACNNNNGTG	2 cut(s)	49, 414
AluBI	AGCT	2 cut(s)	182, 292
AluI	AGCT	2 cut(s)	182, 292
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	592, 635
AlwI	GGATC	2 cut(s)	470, 483
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	3 cut(s)	38, 278, 533
ApoI	RAATTY	3 cut(s)	247, 428, 500
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	4 cut(s)	218, 269, 350, 403
AvaII	GGWCC	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	475
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	25, 265, 520
BceAI	ACGGC	2 cut(s)	34, 528
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	592, 635
BfaI	CTAG	2 cut(s)	99, 311
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	3 cut(s)	39, 279, 534
BlsI	GCNGC	3 cut(s)	40, 280, 535
Bme1390I	CCNGG	2 cut(s)	78, 465
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	78, 465
BmsI	GCATC	2 cut(s)	368, 520
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	132, 501
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	50, 434, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 388
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	50, 434, 480
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	368, 388
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	25, 265, 520
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	368, 388
BsmAI	GTCTC	2 cut(s)	592, 635
BsmBI	CGTCTC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	475
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	470, 483
BsrDI	GCAATG	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	50, 434, 480
BssMI	GATC	1 cut(s)	475
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstDEI	CTNAG	2 cut(s)	440, 610
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	383
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	2 cut(s)	592, 635
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 593
BstNI	CCWGG	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	76, 463
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	25, 265, 520
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	475
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	383
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	269
CseI	GACGC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	88, 347
CviAII	CATG	5 cut(s)	244, 328, 339, 374, 657
CviJI	RGCY	8 cut(s)	49, 55, 182, 232, 292, 439, 460, 515
CviKI_1	RGCY	8 cut(s)	49, 55, 182, 232, 292, 439, 460, 515
CviQI	GTAC	2 cut(s)	88, 347
DdeI	CTNAG	2 cut(s)	440, 610
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	5 cut(s)	247, 331, 342, 377, 660
FaiI	YATR	9 cut(s)	245, 288, 329, 340, 375, 557, 630, 632, 658
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	5 cut(s)	243, 327, 338, 373, 656
FauNDI	CATATG	1 cut(s)	630
Fnu4HI	GCNGC	3 cut(s)	39, 279, 534
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	3 cut(s)	39, 279, 534
FspBI	CTAG	2 cut(s)	99, 311
GluI	GCNGC	3 cut(s)	39, 279, 534
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	609
Hin1II	CATG	5 cut(s)	247, 331, 342, 377, 660
HinfI	GANTC	2 cut(s)	260, 444
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	4 cut(s)	218, 269, 350, 403
Hpy188I	TCNGA	2 cut(s)	577, 613
Hpy188III	TCNNGA	2 cut(s)	454, 496
HpyAV	CCTTC	2 cut(s)	556, 572
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	5 cut(s)	33, 172, 177, 227, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 593
HpyF3I	CTNAG	2 cut(s)	440, 610
Hsp92II	CATG	5 cut(s)	247, 331, 342, 377, 660
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	2 cut(s)	46, 498
LpnPI	CCDG	7 cut(s)	91, 95, 228, 252, 450, 477, 509
Lsp1109I	GCAGC	3 cut(s)	25, 265, 520
LweI	GCATC	2 cut(s)	368, 520
MaeI	CTAG	2 cut(s)	99, 311
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	3 cut(s)	178, 347, 406
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	6 cut(s)	142, 153, 247, 428, 500, 525
MnlI	CCTC	7 cut(s)	243, 306, 362, 444, 450, 471, 538
MseI	TTAA	2 cut(s)	6, 504
MslI	CAYNNNNRTG	3 cut(s)	49, 363, 414
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	78, 465
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	2 cut(s)	78, 593
NciI	CCSGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	630
NdeII	GATC	1 cut(s)	475
NlaIII	CATG	5 cut(s)	247, 331, 342, 377, 660
NlaIV	GGNNCC	1 cut(s)	477
NmeAIII	GCCGAG	1 cut(s)	415
OliI	CACNNNNGTG	2 cut(s)	49, 414
PceI	AGGCCT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	260, 444
PkrI	GCNGC	3 cut(s)	40, 280, 535
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	2 cut(s)	89, 348
RsaNI	GTAC	2 cut(s)	88, 347
RseI	CAYNNNNRTG	3 cut(s)	49, 363, 414
SaqAI	TTAA	2 cut(s)	6, 504
SatI	GCNGC	3 cut(s)	39, 279, 534
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	78, 465
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	9 cut(s)	14, 114, 184, 199, 294, 298, 373, 567, 583
SfaNI	GCATC	2 cut(s)	368, 520
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	3 cut(s)	49, 363, 414
SmlI	CTYRAG	2 cut(s)	147, 516
SmoI	CTYRAG	2 cut(s)	147, 516
Sse9I	AATT	6 cut(s)	142, 153, 247, 428, 500, 525
SseBI	AGGCCT	1 cut(s)	460
SspMI	CTAG	2 cut(s)	99, 311
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	2 cut(s)	76, 463
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	6 cut(s)	142, 153, 247, 428, 500, 525
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	260, 444
Tru1I	TTAA	2 cut(s)	6, 504
Tru9I	TTAA	2 cut(s)	6, 504
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	3 cut(s)	38, 278, 533
TspDTI	ATGAA	2 cut(s)	260, 344
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	3 cut(s)	247, 428, 500
XspI	CTAG	2 cut(s)	99, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.