Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009564

Physical Location & Seq

Genomic Coordinates Forward (+)

663300 .. 663560

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1007400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGAGTTTGAATGATCTCTTCCCAGTACTTGAAAGCATGTTGAATATCTTGCCAGGTATCGGGACGCCTCTTGGTCAAATGGATCCAAAAGCATTCTTGCTGCAAAAATTTAATGCAACAGCTCAAAGACGAGTGATTATATGGTGGTGGTGTTTTTGTCTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

56

Amino Acids

6.37

Weight (kDa)

8.84

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19830
fragaria_vesca	FvH4_3g45460 FvH4_3g45460 FvH4_3g45460 FvH4_6g18020
malus_domestica	MD03G1004800.v1.1 MD11G1006400.v1.1 MD11G1007300.v1.1 MD11G1007400.v1.1
prunus_persica	Prupe.6G004600_v2.0.a1
pyrus_communis	pycom03g00510
rosa_chinensis	RchiOBHm_Chr5g0083251
rosa_laevigata	RLG00000037023
rosa_multiflora	Rmu_sc0039935.1_g000001 Rmu_sc0040082.1_g000002
rosa_roxburghii	Rroxscaffold_1G00001230
rosa_rugosa	Rorug05G0483700
rosa_samantha	Rh5AG533100 Rh5BG560400 Rh5CG583100 Rh5DG569700
rosa_wichuraiana	Rw5G049980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	77, 90
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	10, 32, 43
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	77, 90
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BmcAI	AGTACT	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	13, 82
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	77, 90
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	2 cut(s)	13, 82
BssNI	GRCGYC	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	16, 85
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	13, 82
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	1 cut(s)	122
CviKI_1	RGCY	1 cut(s)	122
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	2 cut(s)	15, 84
DpnII	GATC	2 cut(s)	13, 82
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 140, 142
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	103, 116
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	13, 82
LpnPI	CCDG	3 cut(s)	36, 39, 66
Lsp1109I	GCAGC	1 cut(s)	87
MalI	GATC	2 cut(s)	15, 84
MboI	GATC	2 cut(s)	13, 82
MboII	GAAGA	1 cut(s)	10
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	54
NdeII	GATC	2 cut(s)	13, 82
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	40
PctI	GAATGC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	13, 82
ScaI	AGTACT	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	2 cut(s)	58, 124
Sse9I	AATT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	52
TasI	AATT	1 cut(s)	107
TatI	WGTACW	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	40
ZrmI	AGTACT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.