FvH4_3g45460

Belongs to the PTH family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009564
Physical Location & Seq
Reverse (-)
37700580 .. 37703571
2992 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45460.t3

Sequence Viewer

Length: 666 bp
ATGAAGATGATGAGTAGGTTTAGTAAGCCGCGGTACTTTTGCTCTGATGCTCCGCGGCCGTGGCTGTTTGTGGGTTTGGGCAATCCCGGCGATAAGTACAAAGGAACTCGACACAATGTGGGGTTTGAGATGATTGATGTTTTCGCTCAGTCGCAAGGGATAGCGATGGATAGAGTCCATTGCAAAGCTATATTCGGGCAAGGTTTTGTAGATGAAGCCCCTGTTCTTCTAGCAAAGCCTCAAACGTATATGAACTTGAGTGGTGAATCGACGGGACCTCTTGCTGCTTATTATAAGCTACCTCTAAACCGGGTGCTAGTGTTCCACGATGACATGAACTTACCGTGTGGGGTACTCCGTCTTAACCCAAATGGAGGTCATGGAAGCCACAGTGGGCTGAAGAGTGTGTTCTACAATTTTCGAGGGAACAGAGAATTTCCTCGGTTGAGAATTGGTATTGGAAGGCCTCCTGGTCAAATGGACCCAAAAGCATATTTGCTCCAAAAATTTAATGCAACAGCTCAAGGACGAATCGACACAGCTTTACAAGAGGGAGTCGATGTACTGAAGCTCCTGCTGTCTAAAGGGCTAAACGAGAGTGCAAGACGCTTCAACACAGAGCAAAAATACAAGCACTTAAGGTTAGACACCACCACGGCGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pept_tRNA_hydro

Protein Analysis

222

Amino Acids

24.75

Weight (kDa)

9.78

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 22 - 205 4.4e-59 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccII CGCG 2 cut(s) 31, 55
AciI CCGC 4 cut(s) 29, 31, 53, 55
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 2 cut(s) 434, 506
AcuI CTGAAG 2 cut(s) 419, 587
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 4 cut(s) 35, 98, 354, 564
AfiI CCNNNNNNNGG 1 cut(s) 374
AflII CTTAAG 1 cut(s) 637
AgsI TTSAA 1 cut(s) 613
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 5 cut(s) 188, 298, 521, 542, 571
AluI AGCT 5 cut(s) 188, 298, 521, 542, 571
AoxI GGCC 2 cut(s) 56, 464
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 434, 506
AspS9I GGNCC 2 cut(s) 275, 481
AsuC2I CCSGG 2 cut(s) 87, 311
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 2 cut(s) 275, 481
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 471
BcnI CCSGG 2 cut(s) 87, 311
BfaI CTAG 2 cut(s) 230, 317
BfrI CTTAAG 1 cut(s) 637
BisI GCNGC 3 cut(s) 29, 56, 285
BlsI GCNGC 3 cut(s) 30, 57, 286
Bme1390I CCNGG 3 cut(s) 87, 311, 471
Bme18I GGWCC 2 cut(s) 275, 481
BmgT120I GGNCC 2 cut(s) 275, 481
BmiI GGNNCC 2 cut(s) 276, 483
BmrFI CCNGG 3 cut(s) 87, 311, 471
BmsI GCATC 1 cut(s) 37
BpuEI CTTGAG 2 cut(s) 277, 507
BpuMI CCSGG 2 cut(s) 87, 311
BsaJI CCNNGG 5 cut(s) 29, 53, 59, 440, 654
BsaXI ACNNNNNCTCC 4 cut(s) 546, 555, 576, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 5 cut(s) 29, 53, 59, 440, 654
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 161
BseX3I CGGCCG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 2 cut(s) 31, 55
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 58, 466
BsiEI CGRYCG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 87, 310
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 2 cut(s) 58, 466
BspACI CCGC 4 cut(s) 29, 31, 53, 55
BspANI GGCC 2 cut(s) 58, 466
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 2 cut(s) 31, 55
BspLI GGNNCC 2 cut(s) 276, 483
BspTI CTTAAG 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 178
BssECI CCNNGG 5 cut(s) 29, 53, 59, 440, 654
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 345, 392
Bst6I CTCTTC 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 637
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 4 cut(s) 29, 53, 59, 654
BstFNI CGCG 2 cut(s) 31, 55
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 61, 87
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 3 cut(s) 85, 309, 469
BstUI CGCG 2 cut(s) 31, 55
BstV1I GCAGC 1 cut(s) 271
BstZI CGGCCG 1 cut(s) 56
BsuRI GGCC 2 cut(s) 58, 466
BtgI CCRYGG 4 cut(s) 29, 53, 59, 654
BtgZI GCGATG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 275, 481
Cfr42I CCGCGG 2 cut(s) 32, 56
CseI GACGC 1 cut(s) 615
Csp6I GTAC 4 cut(s) 34, 97, 353, 563
CviAII CATG 3 cut(s) 334, 380, 663
CviQI GTAC 4 cut(s) 34, 97, 353, 563
DdeI CTNAG 1 cut(s) 147
DraIII CACNNNGTG 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 56
EagI CGGCCG 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
EclXI CGGCCG 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 275, 481
Eco52I CGGCCG 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 419, 587
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 469
FaeI CATG 3 cut(s) 337, 383, 666
FaiI YATR 8 cut(s) 191, 249, 251, 294, 335, 381, 493, 664
FaqI GGGAC 1 cut(s) 288
FatI CATG 3 cut(s) 333, 379, 662
Fnu4HI GCNGC 3 cut(s) 29, 56, 285
Fsp4HI GCNGC 3 cut(s) 29, 56, 285
FspBI CTAG 2 cut(s) 230, 317
GluI GCNGC 3 cut(s) 29, 56, 285
HaeIII GGCC 2 cut(s) 58, 466
HapII CCGG 2 cut(s) 87, 310
HgaI GACGC 1 cut(s) 615
Hin1II CATG 3 cut(s) 337, 383, 666
HinfI GANTC 4 cut(s) 174, 266, 531, 555
HpaII CCGG 2 cut(s) 87, 310
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 2 cut(s) 345, 392
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 183, 515, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 87
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 3 cut(s) 337, 383, 666
KspI CCGCGG 2 cut(s) 32, 56
LmnI GCTCC 3 cut(s) 55, 504, 576
LpnPI CCDG 6 cut(s) 100, 234, 323, 456, 483, 587
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 37
MaeI CTAG 2 cut(s) 230, 317
MaeII ACGT 1 cut(s) 245
MboII GAAGA 3 cut(s) 16, 218, 412
MluCI AATT 4 cut(s) 415, 434, 450, 506
MlyI GAGTC 2 cut(s) 183, 564
MnlI CCTC 8 cut(s) 249, 288, 312, 368, 416, 450, 477, 544
MseI TTAA 3 cut(s) 363, 510, 638
MspA1I CMGCKG 2 cut(s) 31, 55
MspCI CTTAAG 1 cut(s) 637
MspI CCGG 2 cut(s) 87, 310
MspR9I CCNGG 3 cut(s) 87, 311, 471
MvaI CCWGG 1 cut(s) 471
MvnI CGCG 2 cut(s) 31, 55
MwoI GCNNNNNNNGC 2 cut(s) 61, 87
NciI CCSGG 2 cut(s) 87, 311
NlaIII CATG 3 cut(s) 337, 383, 666
NlaIV GGNNCC 2 cut(s) 276, 483
PceI AGGCCT 1 cut(s) 466
PfeI GAWTC 2 cut(s) 266, 531
PkrI GCNGC 3 cut(s) 30, 57, 286
PleI GAGTC 2 cut(s) 182, 563
PpsI GAGTC 2 cut(s) 182, 563
PpuMI RGGWCCY 1 cut(s) 275
PsiI TTATAA 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 276, 483
PspPI GGNCC 2 cut(s) 275, 481
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 4 cut(s) 35, 98, 354, 564
RsaNI GTAC 4 cut(s) 34, 97, 353, 563
SacII CCGCGG 2 cut(s) 32, 56
SaqAI TTAA 3 cut(s) 363, 510, 638
SatI GCNGC 3 cut(s) 29, 56, 285
Sau96I GGNCC 2 cut(s) 275, 481
SchI GAGTC 2 cut(s) 183, 564
ScrFI CCNGG 3 cut(s) 87, 311, 471
SfaNI GCATC 1 cut(s) 37
Sfr303I CCGCGG 2 cut(s) 32, 56
SgrBI CCGCGG 2 cut(s) 32, 56
SinI GGWCC 2 cut(s) 275, 481
SmlI CTYRAG 3 cut(s) 256, 522, 637
SmoI CTYRAG 3 cut(s) 256, 522, 637
Sse9I AATT 4 cut(s) 415, 434, 450, 506
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 4 cut(s) 29, 31, 53, 55
SspMI CTAG 2 cut(s) 230, 317
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 3 cut(s) 85, 309, 469
TaaI ACNGT 2 cut(s) 345, 392
TaiI ACGT 1 cut(s) 248
TaqI TCGA 5 cut(s) 109, 269, 421, 534, 558
TasI AATT 4 cut(s) 415, 434, 450, 506
TatI WGTACW 2 cut(s) 96, 562
TauI GCSGC 2 cut(s) 31, 58
TfiI GAWTC 2 cut(s) 266, 531
Tru1I TTAA 3 cut(s) 363, 510, 638
Tru9I TTAA 3 cut(s) 363, 510, 638
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 4 cut(s) 17, 228, 266, 350
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 397
Vha464I CTTAAG 1 cut(s) 637
VpaK11BI GGWCC 2 cut(s) 275, 481
XapI RAATTY 2 cut(s) 434, 506
XspI CTAG 2 cut(s) 230, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.