FvH4_6g18020

Belongs to the PTH family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009564
Physical Location & Seq
Forward (+)
11831559 .. 11833140
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18020.t1

Sequence Viewer

Length: 294 bp
ATGGGTGCCGTGGAGAAAGTCGACATCTCGAGCTCCCGCTACACTATTCACGCCCGCTTTGGTTCACGTGTTCGGGGTCCTCTCCAGTTCAAATCGAATAACGACAGTTCGTCGGACTATTCTTCGACGCCGAATCGTATTGACAAAGGTTTTGTAGATGAAGTCCCTGTTCTTCTAGCAAAGCCTCAAACGTATATGAACTTGAGTGGTTTTTGTGTGTTTTTTTCTAAAACGGGACCTCTTGCTGCTTATTATAAGCTACCTCTAAACTGGGTGCTAGTGTTGAACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pept_tRNA_hydro

Protein Analysis

98

Amino Acids

10.82

Weight (kDa)

9.41

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 41 - 95 5.2e-06 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 21
AciI CCGC 2 cut(s) 37, 55
AcvI CACGTG 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 91, 286
AhdI GACNNNNNGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 33, 259
AluI AGCT 2 cut(s) 33, 259
Alw21I GWGCWC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspS9I GGNCC 2 cut(s) 77, 236
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 2 cut(s) 77, 236
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 232
BfaI CTAG 2 cut(s) 176, 278
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 77, 236
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 77, 236
BmiI GGNNCC 3 cut(s) 7, 78, 237
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 85, 275
BseDI CCNNGG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 85, 275
BseXI GCAGC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 28
BslFI GGGAC 2 cut(s) 149, 249
BsmFI GGGAC 2 cut(s) 149, 249
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 35
BspACI CCGC 2 cut(s) 37, 55
BspLI GGNNCC 3 cut(s) 7, 78, 237
BspT107I GGYRCC 1 cut(s) 5
BsrI ACTGG 2 cut(s) 85, 275
BssECI CCNNGG 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 232
BtgI CCRYGG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 77, 236
CseI GACGC 1 cut(s) 136
CviJI RGCY 3 cut(s) 33, 184, 259
CviKI_1 RGCY 3 cut(s) 33, 184, 259
DriI GACNNNNNGTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 77, 236
Eco53kI GAGCTC 1 cut(s) 33
Eco72I CACGTG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 33
EcoO109I RGGNCCY 2 cut(s) 77, 236
EcoT38I GRGCYC 1 cut(s) 35
FaiI YATR 3 cut(s) 195, 197, 255
FaqI GGGAC 2 cut(s) 149, 249
FauI CCCGC 2 cut(s) 44, 62
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 176, 278
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 68
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 22, 65
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 2 cut(s) 22, 65
Hpy99I CGWCG 2 cut(s) 115, 130
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4IV ACGT 2 cut(s) 67, 191
HpySE526I ACGT 2 cut(s) 67, 191
Hsp92I GRCGYC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 98, 180, 256
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 2 cut(s) 176, 278
MaeII ACGT 2 cut(s) 67, 191
MboII GAAGA 2 cut(s) 114, 164
MhlI GDGCHC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 90, 195, 249, 273
NlaIV GGNNCC 3 cut(s) 7, 78, 237
PaeR7I CTCGAG 1 cut(s) 28
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 247
PmaCI CACGTG 1 cut(s) 68
PmlI CACGTG 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 68
PpuMI RGGWCCY 2 cut(s) 77, 236
PsiI TTATAA 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 35
Psp5II RGGWCCY 2 cut(s) 77, 236
PspCI CACGTG 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 7, 78, 237
PspPI GGNCC 2 cut(s) 77, 236
PspPPI RGGWCCY 2 cut(s) 77, 236
SacI GAGCTC 1 cut(s) 35
SalI GTCGAC 1 cut(s) 20
SatI GCNGC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 77, 236
SduI GDGCHC 1 cut(s) 35
SetI ASST 8 cut(s) 35, 70, 151, 194, 241, 261, 265, 291
Sfr274I CTCGAG 1 cut(s) 28
SinI GGWCC 2 cut(s) 77, 236
SlaI CTCGAG 1 cut(s) 28
SmlI CTYRAG 2 cut(s) 28, 202
SmoI CTYRAG 2 cut(s) 28, 202
SsiI CCGC 2 cut(s) 37, 55
SspMI CTAG 2 cut(s) 176, 278
SstI GAGCTC 1 cut(s) 35
TaaI ACNGT 1 cut(s) 107
TaiI ACGT 2 cut(s) 70, 194
TaqI TCGA 4 cut(s) 21, 29, 95, 125
TfiI GAWTC 1 cut(s) 133
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 174, 212
VpaK11BI GGWCC 2 cut(s) 77, 236
XhoI CTCGAG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 2 cut(s) 176, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.