AT5G19940

plastid-lipid-associated protein 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009105
Physical Location & Seq
Forward (+)
6739624 .. 6740957
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19940.1

Sequence Viewer

Length: 720 bp
ATGGCTGCGACTGCTTCTTCTCTTACAATCGCGTCGTCATTCTCCGAACCACGGACTCAGATCCATTCCTCGAGACGTTTGAATCTCCCTCTTCAATATTCAATCCCGTACAAGGTGTTACGGAGTAGGAGTAGAAGATTAGGACTCGTCGTCAGTTCTGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCTCCTCTCTAAGGTTGCGAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGAGGTGGCACAAGTGGCCGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTCAAAAATCCTCTCATTTTTGGAGATTGGGAAGTGGTGTACTGTTCTAGACCAACCTCTCCTGGTGGAGGCTACAGAAGCGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGATACAAGCCATCGATGCTCCTGATATCGTTAGGAACAAAGTTTCCATTAATGCTTTTGGTTTTCTAGACGGAGACGTCTCCTTGACAGGGAAGCTGAAAGCGTTGGACAGTGAGTGGGTGCAGGTGATATTTGAGCCTCCGGAAATCAAGGTTGGATCTTTGGAGTTCAAATACGGGTTCGAAAGCGAAGTGAAGCTTCGGATCACATACGTTGATGAGAAACTTAGGTTGGGATTGGGATCTAAAGGATCATTGTTCGTCTTTAGAAGGCGTCAATAA

Protein Analysis

239

Amino Acids

26.48

Weight (kDa)

9.49

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 67 - 198 1.9e-09 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
AasI GACNNNNNNGTC 1 cut(s) 515
AatII GACGTC 1 cut(s) 519
Acc36I ACCTGC 1 cut(s) 553
AccII CGCG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 580
AclI AACGTT 1 cut(s) 174
AclWI GGATC 5 cut(s) 55, 604, 650, 688, 697
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 516, 712
AfaI GTAC 4 cut(s) 110, 187, 308, 365
AfiI CCNNNNNNNGG 5 cut(s) 51, 112, 223, 392, 528
AgsI TTSAA 6 cut(s) 82, 95, 102, 302, 427, 610
AhdI GACNNNNNGTC 1 cut(s) 149
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 4 cut(s) 576, 608, 653, 685
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 5 cut(s) 167, 181, 298, 535, 637
AluI AGCT 5 cut(s) 167, 181, 298, 535, 637
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 4 cut(s) 67, 422, 507, 523
AlwI GGATC 5 cut(s) 55, 604, 650, 688, 697
Ama87I CYCGRG 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 2 cut(s) 288, 412
ApeKI GCWGC 2 cut(s) 5, 265
AseI ATTAAT 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 577
AsuII TTCGAA 1 cut(s) 621
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 233, 458
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 387
BcoDI GTCTC 4 cut(s) 67, 422, 507, 523
BfaI CTAG 2 cut(s) 372, 506
BfmI CTRYAG 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 553
BisI GCNGC 2 cut(s) 6, 266
BlpI GCTNAGC 1 cut(s) 254
BlsI GCNGC 2 cut(s) 7, 267
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 191
BmeRI GACNNNNNGTC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 621
Bsa29I ATCGAT 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 679
BsaHI GRCGYC 2 cut(s) 516, 712
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 112, 223, 392, 528
Bse1I ACTGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 679
BseAI TCCGGA 1 cut(s) 580
BseBI CCWGG 1 cut(s) 387
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 679
BseLI CCNNNNNNNGG 5 cut(s) 51, 112, 223, 392, 528
BseMII CTCAG 2 cut(s) 71, 252
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 290, 414
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 291, 581
BslI CCNNNNNNNGG 5 cut(s) 51, 112, 223, 392, 528
BsmAI GTCTC 4 cut(s) 67, 422, 507, 523
BsmBI CGTCTC 4 cut(s) 67, 422, 507, 523
BsnI GGCC 2 cut(s) 290, 414
BsoBI CYCGRG 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 621
Bsp1286I GDGCHC 1 cut(s) 183
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 6 cut(s) 60, 199, 596, 642, 680, 689
Bsp1720I GCTNAGC 1 cut(s) 254
BspANI GGCC 2 cut(s) 290, 414
BspCNI CTCAG 2 cut(s) 70, 253
BspDI ATCGAT 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 580
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 5 cut(s) 55, 604, 650, 688, 697
BspT104I TTCGAA 1 cut(s) 621
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 6 cut(s) 60, 199, 596, 642, 680, 689
BssNI GRCGYC 2 cut(s) 516, 712
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 311, 368, 551
Bst6I CTCTTC 2 cut(s) 96, 425
BstACI GRCGYC 2 cut(s) 516, 712
BstBI TTCGAA 1 cut(s) 621
BstDEI CTNAG 5 cut(s) 57, 222, 254, 261, 665
BstDSI CCRYGG 1 cut(s) 50
BstENI CCTNNNNNAGG 2 cut(s) 221, 390
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 6 cut(s) 63, 202, 599, 645, 683, 692
BstMAI GTCTC 4 cut(s) 67, 422, 507, 523
BstMBI GATC 6 cut(s) 60, 199, 596, 642, 680, 689
BstMWI GCNNNNNNNGC 5 cut(s) 11, 287, 402, 411, 455
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 397
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 3 cut(s) 60, 596, 680
BstYI RGATCY 3 cut(s) 60, 596, 680
Bsu15I ATCGAT 1 cut(s) 453
BsuRI GGCC 2 cut(s) 290, 414
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 556
BveI ACCTGC 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 453
CseI GACGC 3 cut(s) 21, 259, 701
Csp6I GTAC 4 cut(s) 109, 186, 307, 364
CviQI GTAC 4 cut(s) 109, 186, 307, 364
DdeI CTNAG 5 cut(s) 57, 222, 254, 261, 665
DpnI GATC 6 cut(s) 62, 201, 598, 644, 682, 691
DpnII GATC 6 cut(s) 60, 199, 596, 642, 680, 689
DrdI GACNNNNNNGTC 1 cut(s) 515
DriI GACNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 96, 425
Eam1105I GACNNNNNGTC 1 cut(s) 149
EarI CTCTTC 2 cut(s) 96, 425
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 181
EcoNI CCTNNNNNAGG 2 cut(s) 221, 390
EcoRII CCWGG 1 cut(s) 385
EcoRV GATATC 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 183
Esp3I CGTCTC 4 cut(s) 67, 422, 507, 523
FaiI YATR 1 cut(s) 649
FalI AAGNNNNNCTT 2 cut(s) 621, 653
Fnu4HI GCNGC 2 cut(s) 6, 266
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 6, 266
FspBI CTAG 2 cut(s) 372, 506
GluI GCNGC 2 cut(s) 6, 266
HaeIII GGCC 2 cut(s) 290, 414
HapII CCGG 2 cut(s) 291, 581
HgaI GACGC 3 cut(s) 21, 259, 701
Hin1I GRCGYC 2 cut(s) 516, 712
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 3 cut(s) 55, 82, 144
HpaII CCGG 2 cut(s) 291, 581
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 46, 60, 642
Hpy188III TCNNGA 5 cut(s) 72, 372, 461, 506, 581
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 2 cut(s) 37, 152
HpyAV CCTTC 1 cut(s) 702
HpyCH4III ACNGT 3 cut(s) 311, 368, 551
HpyCH4IV ACGT 4 cut(s) 76, 174, 516, 651
HpyCH4V TGCA 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 287, 402, 411, 455
HpyF3I CTNAG 5 cut(s) 57, 222, 254, 261, 665
HpySE526I ACGT 4 cut(s) 76, 174, 516, 651
Hsp92I GRCGYC 2 cut(s) 516, 712
Kpn2I TCCGGA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 60, 199, 596, 642, 680, 689
LmnI GCTCC 4 cut(s) 172, 186, 319, 463
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 372, 506
MaeII ACGT 4 cut(s) 76, 174, 516, 651
MaeIII GTNAC 2 cut(s) 117, 247
MalI GATC 6 cut(s) 62, 201, 598, 644, 682, 691
MboI GATC 6 cut(s) 60, 199, 596, 642, 680, 689
MboII GAAGA 5 cut(s) 9, 83, 147, 412, 415
MflI RGATCY 3 cut(s) 60, 596, 680
MhlI GDGCHC 1 cut(s) 183
MlyI GAGTC 2 cut(s) 49, 138
MmeI TCCRAC 2 cut(s) 525, 574
MroI TCCGGA 1 cut(s) 580
MseI TTAA 1 cut(s) 489
MspI CCGG 2 cut(s) 291, 581
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 5 cut(s) 11, 287, 402, 411, 455
NdeII GATC 6 cut(s) 60, 199, 596, 642, 680, 689
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 621
PaeR7I CTCGAG 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 553
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 7, 267
PleI GAGTC 2 cut(s) 49, 138
PpsI GAGTC 2 cut(s) 49, 138
PshBI ATTAAT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 3 cut(s) 60, 596, 680
RsaI GTAC 4 cut(s) 110, 187, 308, 365
RsaNI GTAC 4 cut(s) 109, 186, 307, 364
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 6, 266
Sau3AI GATC 6 cut(s) 60, 199, 596, 642, 680, 689
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 2 cut(s) 49, 138
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 397
Sfr274I CTCGAG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 621
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SspI AATATT 1 cut(s) 98
SspMI CTAG 2 cut(s) 372, 506
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 3 cut(s) 311, 368, 551
TaiI ACGT 4 cut(s) 79, 177, 519, 654
TaqI TCGA 3 cut(s) 71, 453, 621
TatI WGTACW 2 cut(s) 306, 363
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 5, 265
Tsp45I GTSAC 1 cut(s) 247
TspGWI ACGGA 4 cut(s) 67, 136, 173, 525
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 191
VspI ATTAAT 1 cut(s) 489
XagI CCTNNNNNAGG 2 cut(s) 221, 390
XbaI TCTAGA 2 cut(s) 371, 505
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 2 cut(s) 372, 506
ZraI GACGTC 1 cut(s) 517
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.