FvH4_2g30680

plastid-lipid-associated protein 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009105
Physical Location & Seq
Reverse (-)
23719121 .. 23721661
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30680.t4

Sequence Viewer

Length: 549 bp
ATGGCTGCTGCTCTTGCTTCTTCACTAGCCTTATCGTCCTCCACACTCAGAGGAGCCTCCGATCCCTTAAAACCCAGGTTCCATAATCTCTCCGCAAAACCCACCAATTTGGGCTTAGCTGTTTCTCCTCACTCTCGTTCTCGTCACCGCAAAGCGTTGAGAATCTCGGCTACTGTCTCGGTTTCAAGCCCGGAAACACGGACCGGTCCCGATGATCTCGCTGCTGCTATTCTTTCCAAGGTGATGAATTCGGATAGAGGAGTCTTGCTGGAAAAGGAACAACATAAGGAGGTAGCTCAAGTGGCCGAGGCATTGCAGAGTTACTGTGTTAGTGAACCAGTGAAATGCCCTCTTATTTTCGGAGAATGGGATGTGCTGTACTGTTCAGTGCCAACATCGCCTGGGGGTGGCTACAGGAGTACGCTGGGCCGCCTCGTTTTCAAAACAAAGGAGATGATTCAAGTTATTGAAGCTCCTGACATTGTTAAAAACAAGGTGTCCTTCTCTGCTTTTGGGTTCTTGGATGGAGAAGTCTCTTTAACAGTGTGA

Protein Analysis

183

Amino Acids

19.47

Weight (kDa)

9.05

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 75 - 181 3.1e-06 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 93, 148, 430
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 247
AfaI GTAC 2 cut(s) 380, 421
AfiI CCNNNNNNNGG 1 cut(s) 407
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 4 cut(s) 186, 442, 461, 470
AjnI CCWGG 2 cut(s) 74, 400
AluBI AGCT 3 cut(s) 119, 296, 473
AluI AGCT 3 cut(s) 119, 296, 473
Alw26I GTCTC 2 cut(s) 181, 538
AlwI GGATC 1 cut(s) 56
AoxI GGCC 2 cut(s) 303, 427
ApeKI GCWGC 4 cut(s) 5, 8, 221, 224
ApoI RAATTY 1 cut(s) 247
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 3 cut(s) 201, 206, 427
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 137, 253
AvaII GGWCC 2 cut(s) 201, 206
BbvI GCAGC 2 cut(s) 208, 211
BccI CCATC 1 cut(s) 518
BciT130I CCWGG 2 cut(s) 76, 402
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 181, 538
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 5 cut(s) 6, 9, 222, 225, 430
BlpI GCTNAGC 1 cut(s) 115
BlsI GCNGC 5 cut(s) 7, 10, 223, 226, 431
Bme1390I CCNGG 3 cut(s) 76, 191, 402
Bme18I GGWCC 2 cut(s) 201, 206
BmgT120I GGNCC 3 cut(s) 201, 206, 427
BmiI GGNNCC 3 cut(s) 55, 80, 208
BmrFI CCNGG 3 cut(s) 76, 191, 402
Bpu1102I GCTNAGC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 74, 237, 306, 401
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 76, 402
BseDI CCNNGG 4 cut(s) 74, 237, 306, 401
BseGI GGATG 2 cut(s) 376, 529
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 3 cut(s) 66, 117, 273
BseXI GCAGC 2 cut(s) 208, 211
BseYI CCCAGC 1 cut(s) 424
BshFI GGCC 2 cut(s) 305, 429
BshTI ACCGGT 1 cut(s) 203
BsiSI CCGG 2 cut(s) 191, 204
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 181, 538
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 2 cut(s) 305, 429
Bsp143I GATC 2 cut(s) 61, 214
Bsp1720I GCTNAGC 1 cut(s) 115
BspACI CCGC 3 cut(s) 93, 148, 430
BspANI GGCC 2 cut(s) 305, 429
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 55, 80, 208
BspPI GGATC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 74, 237, 306, 401
BssMI GATC 2 cut(s) 61, 214
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 76, 402
Bst4CI ACNGT 4 cut(s) 175, 326, 383, 544
BstDEI CTNAG 2 cut(s) 47, 115
BstF5I GGATG 2 cut(s) 376, 529
BstKTI GATC 2 cut(s) 64, 217
BstMAI GTCTC 2 cut(s) 181, 538
BstMBI GATC 2 cut(s) 61, 214
BstMWI GCNNNNNNNGC 3 cut(s) 14, 302, 397
BstNI CCWGG 2 cut(s) 76, 402
BstSCI CCNGG 3 cut(s) 74, 189, 400
BstSFI CTRYAG 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 208, 211
BstXI CCANNNNNNTGG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 305, 429
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 376, 529
BtsIMutI CAGTG 3 cut(s) 345, 393, 549
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 201, 206, 427
CpoI CGGWCCG 1 cut(s) 201
Csp6I GTAC 2 cut(s) 379, 420
CspAI ACCGGT 1 cut(s) 203
CspI CGGWCCG 1 cut(s) 201
CviQI GTAC 2 cut(s) 379, 420
DdeI CTNAG 2 cut(s) 47, 115
DpnI GATC 2 cut(s) 63, 216
DpnII GATC 2 cut(s) 61, 214
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 201, 206
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 74, 400
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaiI YATR 2 cut(s) 84, 285
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 192
Fnu4HI GCNGC 5 cut(s) 6, 9, 222, 225, 430
FokI GGATG 2 cut(s) 383, 536
Fsp4HI GCNGC 5 cut(s) 6, 9, 222, 225, 430
FspBI CTAG 1 cut(s) 26
GluI GCNGC 5 cut(s) 6, 9, 222, 225, 430
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 2 cut(s) 305, 429
HapII CCGG 2 cut(s) 191, 204
HinfI GANTC 3 cut(s) 162, 261, 457
HpaII CCGG 2 cut(s) 191, 204
HphI GGTGA 2 cut(s) 137, 253
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 4 cut(s) 50, 61, 253, 362
Hpy188III TCNNGA 2 cut(s) 209, 476
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 4 cut(s) 175, 326, 383, 544
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 302, 397
HpyF3I CTNAG 2 cut(s) 47, 115
Kzo9I GATC 2 cut(s) 61, 214
LmnI GCTCC 2 cut(s) 53, 478
Lsp1109I GCAGC 2 cut(s) 208, 211
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 143, 320
MalI GATC 2 cut(s) 63, 216
MboI GATC 2 cut(s) 61, 214
MboII GAAGA 1 cut(s) 12
MluCI AATT 2 cut(s) 106, 247
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 9 cut(s) 44, 49, 67, 138, 251, 283, 301, 360, 443
MseI TTAA 3 cut(s) 68, 486, 539
MspI CCGG 2 cut(s) 191, 204
MspR9I CCNGG 3 cut(s) 76, 191, 402
MvaI CCWGG 2 cut(s) 76, 402
MwoI GCNNNNNNNGC 3 cut(s) 14, 302, 397
NciI CCSGG 1 cut(s) 191
NdeII GATC 2 cut(s) 61, 214
NlaIV GGNNCC 3 cut(s) 55, 80, 208
NmeAIII GCCGAG 2 cut(s) 146, 331
NmuCI GTSAC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 162, 457
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 5 cut(s) 7, 10, 223, 226, 431
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 74, 400
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 74, 400
PspN4I GGNNCC 3 cut(s) 55, 80, 208
PspPI GGNCC 3 cut(s) 201, 206, 427
RsaI GTAC 2 cut(s) 380, 421
RsaNI GTAC 2 cut(s) 379, 420
Rsr2I CGGWCCG 1 cut(s) 201
RsrII CGGWCCG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 68, 486, 539
SatI GCNGC 5 cut(s) 6, 9, 222, 225, 430
Sau3AI GATC 2 cut(s) 61, 214
Sau96I GGNCC 3 cut(s) 201, 206, 427
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 76, 191, 402
SetI ASST 7 cut(s) 80, 121, 243, 294, 298, 475, 498
SfcI CTRYAG 1 cut(s) 412
SinI GGWCC 2 cut(s) 201, 206
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 2 cut(s) 106, 247
SsiI CCGC 3 cut(s) 93, 148, 430
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 74, 189, 400
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 4 cut(s) 175, 326, 383, 544
TasI AATT 2 cut(s) 106, 247
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 2 cut(s) 162, 457
Tru1I TTAA 3 cut(s) 68, 486, 539
Tru9I TTAA 3 cut(s) 68, 486, 539
TscAI CASTG 3 cut(s) 345, 393, 549
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 4 cut(s) 5, 8, 221, 224
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 3 cut(s) 345, 393, 549
VpaK11BI GGWCC 2 cut(s) 201, 206
XapI RAATTY 1 cut(s) 247
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.