Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009105

Physical Location & Seq

Genomic Coordinates Forward (+)

38625213 .. 38627169

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G462100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTGCTGCATTAACCTCTTCATTAGCTTTGTCACCCTCCACATTCAGAGGAGGCCCTGAGCCCTCGAAACCCCAATTCCTCAATTTTTGCTCAAAACCCACAAATTTGGCTTTTGCCATTTTACCTTACACTCGTTGTCGTCGGCACAAAACGTTGAGGATATTGGCCTCTGTTTCAGTCTCCAACCCCCAAGTGCTGACCGGTCCCGAAGAGCTCTCTGCGTCTATTCTTTCCAAGGTGACACATTCTGATAGAGGAGTTTTGCTGAAAAAGGAAGAACAAGAAGAGGTAGCTGAAGTGGCTGAGAAATTGCAGAGCTTTTGCGTTAGTGAACCAGTGAAATGCCCTCTTATTTTCGGAGATTGGGATGTGGTGTACTGTTCAGTGCCGACATCACCCGGGGGTGGCTACAGAAGTACGTTAGGCCGCCTTGTTTTTAAAACGAAGGAGATGATTCAAGTTATTGAAGCTCCTGACATTGTCAAAAACAAAGTCTCCTTCTCTGCTTTTGGGTTCTTGGATGGAGAAGTCTCTTTAACAGGAAAGTTGAAGGCTTTAGACGATAAATGGATCCAAGTTATATTTGAGCCACCAGAACTGAAGGTTGGTGCATTGGAGTTCCGATACGGCGGTGAAAGCGAGGTTAAACTCCAGATCACATACATAGATGACAAGGTCAGGTTGGGGAAGGGCTCTAAAGGTTCACTATTTGTTTTCCAAAGACGTGGTAATTCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

248

Amino Acids

27.11

Weight (kDa)

8.89

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19940 AT5G19940
fragaria_vesca	FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680
malus_domestica	MD15G1109900.v1.1
prunus_persica	Prupe.1G462100_v2.0.a1
pyrus_communis	pycom15g10000
rosa_chinensis	RchiOBHm_Chr6g0312201
rosa_laevigata	RLG00000010343
rosa_multiflora	Rmu_sc0010924.1_g000006 Rmu_sc0023979.1_g000002 Rmu_sc0042994.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156960
rosa_rugosa	Rorug06G0394100
rosa_samantha	Rh6AG510900 Rh6BG521900 Rh6CG527800
rosa_wichuraiana	Rw6G044430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	430, 633
AclI	AACGTT	1 cut(s)	155
AclWI	GGATC	2 cut(s)	568, 581
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	318, 623
AfaI	GTAC	2 cut(s)	380, 421
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	461, 470, 553
AjiI	CACGTC	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AluBI	AGCT	5 cut(s)	29, 217, 296, 321, 473
AluI	AGCT	5 cut(s)	29, 217, 296, 321, 473
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	187, 502, 538
AlwI	GGATC	2 cut(s)	568, 581
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	3 cut(s)	55, 168, 427
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	106
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
AsiGI	ACCGGT	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	56, 206
AsuC2I	CCSGG	2 cut(s)	402, 403
AsuHPI	GGTGA	4 cut(s)	27, 253, 390, 647
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BamHI	GGATCC	1 cut(s)	573
BanII	GRGCYC	3 cut(s)	66, 219, 698
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	646
BcnI	CCSGG	2 cut(s)	402, 403
BcoDI	GTCTC	3 cut(s)	187, 502, 538
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	3 cut(s)	6, 9, 430
BlsI	GCNGC	3 cut(s)	7, 10, 431
Bme1390I	CCNGG	2 cut(s)	402, 403
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	2 cut(s)	56, 206
BmiI	GGNNCC	2 cut(s)	208, 575
BmrFI	CCNGG	2 cut(s)	402, 403
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	402, 403
BsaJI	CCNNGG	3 cut(s)	237, 401, 402
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	237, 401, 402
BseGI	GGATG	2 cut(s)	376, 529
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	51, 297
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	2 cut(s)	66, 273
BshFI	GGCC	3 cut(s)	57, 170, 429
BshTI	ACCGGT	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	204, 402
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	3 cut(s)	187, 502, 538
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	57, 170, 429
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	3 cut(s)	66, 219, 698
Bsp143I	GATC	2 cut(s)	573, 657
BspACI	CCGC	2 cut(s)	430, 633
BspANI	GGCC	3 cut(s)	57, 170, 429
BspCNI	CTCAG	2 cut(s)	52, 298
BspLI	GGNNCC	2 cut(s)	208, 575
BspPI	GGATC	2 cut(s)	568, 581
BspQI	GCTCTTC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	237, 401, 402
BssMI	GATC	2 cut(s)	573, 657
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	3 cut(s)	25, 207, 282
BstDEI	CTNAG	2 cut(s)	60, 306
BstF5I	GGATG	2 cut(s)	376, 529
BstKTI	GATC	2 cut(s)	576, 660
BstMAI	GTCTC	3 cut(s)	187, 502, 538
BstMBI	GATC	2 cut(s)	573, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 639
BstSCI	CCNGG	2 cut(s)	400, 401
BstSFI	CTRYAG	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	573
BstXI	CCANNNNNNTGG	2 cut(s)	109, 728
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	57, 170, 429
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	2 cut(s)	376, 529
BtsIMutI	CAGTG	2 cut(s)	345, 393
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	56, 206
Cfr9I	CCCGGG	1 cut(s)	401
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	379, 420
CspAI	ACCGGT	1 cut(s)	203
CviQI	GTAC	2 cut(s)	379, 420
DdeI	CTNAG	2 cut(s)	60, 306
DpnI	GATC	2 cut(s)	575, 659
DpnII	GATC	2 cut(s)	573, 657
DraI	TTTAAA	1 cut(s)	442
Eam1104I	CTCTTC	3 cut(s)	25, 207, 282
EarI	CTCTTC	3 cut(s)	25, 207, 282
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	3 cut(s)	66, 219, 698
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	318, 623
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	3 cut(s)	66, 219, 698
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	3 cut(s)	584, 664, 668
FaqI	GGGAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	6, 9, 430
FokI	GGATG	2 cut(s)	383, 536
FriOI	GRGCYC	3 cut(s)	66, 219, 698
Fsp4HI	GCNGC	3 cut(s)	6, 9, 430
GluI	GCNGC	3 cut(s)	6, 9, 430
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	3 cut(s)	57, 170, 429
HapII	CCGG	2 cut(s)	204, 402
HgaI	GACGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	204, 402
HphI	GGTGA	4 cut(s)	27, 253, 390, 647
Hpy166II	GTNNAC	3 cut(s)	335, 379, 707
Hpy188I	TCNGA	4 cut(s)	50, 253, 362, 626
Hpy188III	TCNNGA	3 cut(s)	209, 476, 655
Hpy8I	GTNNAC	3 cut(s)	335, 379, 707
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	5 cut(s)	442, 511, 547, 598, 685
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	3 cut(s)	155, 422, 727
HpyCH4V	TGCA	3 cut(s)	11, 316, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 639
HpyF3I	CTNAG	2 cut(s)	60, 306
HpySE526I	ACGT	3 cut(s)	155, 422, 727
Kzo9I	GATC	2 cut(s)	573, 657
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	9 cut(s)	72, 217, 351, 415, 489, 528, 609, 667, 668
MaeII	ACGT	3 cut(s)	155, 422, 727
MaeIII	GTNAC	2 cut(s)	33, 241
MalI	GATC	2 cut(s)	575, 659
MboI	GATC	2 cut(s)	573, 657
MboII	GAAGA	4 cut(s)	12, 224, 290, 299
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	3 cut(s)	66, 219, 698
MluCI	AATT	5 cut(s)	77, 85, 106, 311, 733
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	4 cut(s)	14, 441, 539, 648
MspI	CCGG	2 cut(s)	204, 402
MspR9I	CCNGG	2 cut(s)	402, 403
MwoI	GCNNNNNNNGC	2 cut(s)	302, 639
NciI	CCSGG	2 cut(s)	402, 403
NdeII	GATC	2 cut(s)	573, 657
NlaIV	GGNNCC	2 cut(s)	208, 575
NmuCI	GTSAC	2 cut(s)	33, 241
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	457
PflFI	GACNNNGTC	2 cut(s)	482, 677
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	7, 10, 431
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	208, 575
PspPI	GGNCC	2 cut(s)	56, 206
PsuI	RGATCY	1 cut(s)	573
PsyI	GACNNNGTC	2 cut(s)	482, 677
RsaI	GTAC	2 cut(s)	380, 421
RsaNI	GTAC	2 cut(s)	379, 420
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	14, 441, 539, 648
SatI	GCNGC	3 cut(s)	6, 9, 430
Sau3AI	GATC	2 cut(s)	573, 657
Sau96I	GGNCC	2 cut(s)	56, 206
ScrFI	CCNGG	2 cut(s)	402, 403
SduI	GDGCHC	3 cut(s)	66, 219, 698
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	206
SmaI	CCCGGG	1 cut(s)	403
Sse9I	AATT	5 cut(s)	77, 85, 106, 311, 733
SsiI	CCGC	2 cut(s)	430, 633
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	400, 401
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	3 cut(s)	158, 425, 730
TaqI	TCGA	1 cut(s)	68
TasI	AATT	5 cut(s)	77, 85, 106, 311, 733
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	4 cut(s)	14, 441, 539, 648
Tru9I	TTAA	4 cut(s)	14, 441, 539, 648
TscAI	CASTG	2 cut(s)	345, 393
TseFI	GTSAC	2 cut(s)	33, 241
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	2 cut(s)	33, 241
TspDTI	ATGAA	1 cut(s)	12
TspMI	CCCGGG	1 cut(s)	401
TspRI	CASTG	2 cut(s)	345, 393
Tth111I	GACNNNGTC	2 cut(s)	482, 677
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.