Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042994.1

Orthogroup ID

OG0009105

Physical Location & Seq

Genomic Coordinates Reverse (-)

14180 .. 14815

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042994.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgtactctgcccgtgcaaaacccaatctggtttcgaagctcagcatcatcaacttcatggctgctgctctcgcttcttcactagccttatcgtgctccacactcagaggaggctccgatccctcaaaacccaggttccctaatctctgcgcaaagcccactaatttgggcttagctgtttcgcctcactctcattctcgtaaccgcaaaaagttgagaatctcggctactgtctcggtctctaacccggaattacggaccggtcccgacgagctcgctgcttctattctctccaaggtgatagattcggacagaggagttttgctggaagaggaacaacataaggaggtagctcaagtggccgaggcattgcagaactactgtgttagtgaaccagtgaaatgccctctaattttcggaggtaaaatcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

144

Amino Acids

15.38

Weight (kDa)

9.35

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19940 AT5G19940
fragaria_vesca	FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680
malus_domestica	MD15G1109900.v1.1
prunus_persica	Prupe.1G462100_v2.0.a1
pyrus_communis	pycom15g10000
rosa_chinensis	RchiOBHm_Chr6g0312201
rosa_laevigata	RLG00000010343
rosa_multiflora	Rmu_sc0010924.1_g000006 Rmu_sc0023979.1_g000002 Rmu_sc0042994.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156960
rosa_rugosa	Rorug06G0394100
rosa_samantha	Rh6AG510900 Rh6BG521900 Rh6CG527800
rosa_wichuraiana	Rw6G044430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	151
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	360
AfaI	GTAC	1 cut(s)	5
AgeI	ACCGGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	4 cut(s)	40, 176, 274, 353
AluI	AGCT	4 cut(s)	40, 176, 274, 353
Alw21I	GWGCWC	2 cut(s)	98, 276
Alw26I	GTCTC	2 cut(s)	238, 244
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	62, 65, 278
AsiGI	ACCGGT	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	258, 263
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	258, 263
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	98, 276
BbvI	GCAGC	3 cut(s)	49, 52, 265
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	238, 244
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	3 cut(s)	63, 66, 279
BlpI	GCTNAGC	2 cut(s)	41, 172
BlsI	GCNGC	3 cut(s)	64, 67, 280
Bme1390I	CCNGG	2 cut(s)	133, 248
Bme18I	GGWCC	2 cut(s)	258, 263
BmgT120I	GGNCC	2 cut(s)	258, 263
BmiI	GGNNCC	3 cut(s)	115, 137, 265
BmrFI	CCNGG	2 cut(s)	133, 248
BmsI	GCATC	1 cut(s)	54
Bpu1102I	GCTNAGC	2 cut(s)	41, 172
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	131, 294, 363
BsaWI	WCCGGW	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	131, 294, 363
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	55, 118
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	2 cut(s)	123, 330
BseXI	GCAGC	3 cut(s)	49, 52, 265
BshFI	GGCC	1 cut(s)	362
BshTI	ACCGGT	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	98, 276
BsiSI	CCGG	2 cut(s)	248, 261
BslFI	GGGAC	1 cut(s)	249
BsmAI	GTCTC	2 cut(s)	238, 244
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	98, 276
Bsp143I	GATC	1 cut(s)	118
Bsp1720I	GCTNAGC	2 cut(s)	41, 172
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	54, 117
BspLI	GGNNCC	3 cut(s)	115, 137, 265
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	131, 294, 363
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	2 cut(s)	232, 383
Bst6I	CTCTTC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	41, 104, 172
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	2 cut(s)	238, 244
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 359
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	131, 246
BstV1I	GCAGC	3 cut(s)	49, 52, 265
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	258, 263
CpoI	CGGWCCG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	260
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	1 cut(s)	58
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	41, 104, 172
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	258, 263
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	59, 342
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	63, 66, 279
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	63, 66, 279
FspBI	CTAG	1 cut(s)	83
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	3 cut(s)	63, 66, 279
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	2 cut(s)	248, 261
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	219, 305
HpaII	CCGG	2 cut(s)	248, 261
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	4 cut(s)	107, 118, 310, 419
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	232, 383
HpyCH4V	TGCA	2 cut(s)	17, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 359
HpyF3I	CTNAG	3 cut(s)	41, 104, 172
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	101, 119
LpnPI	CCDG	7 cut(s)	14, 118, 145, 261, 274, 311, 408
Lsp1109I	GCAGC	3 cut(s)	49, 52, 265
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	69, 341
MhlI	GDGCHC	2 cut(s)	98, 276
MluCI	AATT	3 cut(s)	163, 251, 411
MspI	CCGG	2 cut(s)	248, 261
MspR9I	CCNGG	2 cut(s)	133, 248
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	71, 359
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	115, 137, 265
NmeAIII	GCCGAG	2 cut(s)	203, 388
NsbI	TGCGCA	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	219, 305
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	64, 67, 280
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	115, 137, 265
PspPI	GGNCC	2 cut(s)	258, 263
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	276
SatI	GCNGC	3 cut(s)	63, 66, 279
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	2 cut(s)	258, 263
ScrFI	CCNGG	2 cut(s)	133, 248
SduI	GDGCHC	2 cut(s)	98, 276
SetI	ASST	8 cut(s)	42, 137, 178, 276, 300, 351, 355, 424
SfaNI	GCATC	1 cut(s)	54
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	2 cut(s)	258, 263
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	3 cut(s)	163, 251, 411
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	2 cut(s)	131, 246
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	232, 383
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	3 cut(s)	163, 251, 411
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	219, 305
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	62, 65, 278
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	258, 263
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.