Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010924.1

Orthogroup ID

OG0009105

Physical Location & Seq

Genomic Coordinates Reverse (-)

13877 .. 15541

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010924.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtactctgcccgtgcaaaacccaatctggtttcgaagctcagcatcatcaacttcatggctgctgctctcgcttcttcactagccttatcgtgctccacactcagaggaggctccgatccctcaaaacccaggttccctaatctctgcgcaaagcccactaatttgggcttagctgtttcgcctcactctcattctcgtaaccgcaaaaagttgagaatctcggctactgtctcggtctctaacccggaattacggaccggtcccgacgagctcgctgcttctattctctccaaggtgatagattcggacagaggagttttgctggaagaggaacaacataaggaggtagctcaagtggccgaggcattgcagaactactgtgttagtgaaccagtgaaatgccctctaattttcggagattgggatgtgctgtactgttcagtgccaacatcgcctgggggtggctataggagtacacttggccgccttgtttttaaaacaaaggagatgattcaagttattgaagctcctgacattgttaaaaacaaggtgtccttctctgcttttgggttcttggatggagaagtctctttaacaggaaagttgaaggctctggatgataaatgggttcaagttatttttgaaccaccagaattgaaggttggagctttggactttcgatatggcggtgaaagtgaggttaaactccagatcacatatatagatgagaatatcaggctggggaaaggctctagaggttcactgtttgttttcagaagacaaggtaaatctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

266

Amino Acids

29.02

Weight (kDa)

9.13

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19940 AT5G19940
fragaria_vesca	FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680 FvH4_2g30680
malus_domestica	MD15G1109900.v1.1
prunus_persica	Prupe.1G462100_v2.0.a1
pyrus_communis	pycom15g10000
rosa_chinensis	RchiOBHm_Chr6g0312201
rosa_laevigata	RLG00000010343
rosa_multiflora	Rmu_sc0010924.1_g000006 Rmu_sc0023979.1_g000002 Rmu_sc0042994.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156960
rosa_rugosa	Rorug06G0394100
rosa_samantha	Rh6AG510900 Rh6BG521900 Rh6CG527800
rosa_wichuraiana	Rw6G044430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	151
AciI	CCGC	3 cut(s)	205, 487, 690
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	360, 484
AfaI	GTAC	3 cut(s)	5, 437, 478
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	6 cut(s)	518, 527, 610, 635, 647, 661
AjnI	CCWGG	2 cut(s)	131, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	6 cut(s)	40, 176, 274, 353, 530, 671
AluI	AGCT	6 cut(s)	40, 176, 274, 353, 530, 671
Alw21I	GWGCWC	2 cut(s)	98, 276
Alw26I	GTCTC	3 cut(s)	238, 244, 595
AlwI	GGATC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	360, 484
ApeKI	GCWGC	3 cut(s)	62, 65, 278
AsiGI	ACCGGT	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	258, 263
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	310, 704
AsuII	TTCGAA	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	258, 263
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	787
Bbv12I	GWGCWC	2 cut(s)	98, 276
BbvI	GCAGC	3 cut(s)	49, 52, 265
BccI	CCATC	1 cut(s)	575
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	2 cut(s)	133, 459
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	238, 244, 595
BfaI	CTAG	2 cut(s)	83, 756
BfmI	CTRYAG	1 cut(s)	469
BisI	GCNGC	4 cut(s)	63, 66, 279, 487
BlpI	GCTNAGC	2 cut(s)	41, 172
BlsI	GCNGC	4 cut(s)	64, 67, 280, 488
Bme1390I	CCNGG	3 cut(s)	133, 248, 459
Bme18I	GGWCC	2 cut(s)	258, 263
BmgT120I	GGNCC	2 cut(s)	258, 263
BmiI	GGNNCC	3 cut(s)	115, 137, 265
BmrFI	CCNGG	3 cut(s)	133, 248, 459
BmsI	GCATC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	695
Bpu1102I	GCTNAGC	2 cut(s)	41, 172
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	4 cut(s)	131, 294, 363, 458
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	133, 459
BseDI	CCNNGG	4 cut(s)	131, 294, 363, 458
BseGI	GGATG	3 cut(s)	433, 586, 625
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	55, 118
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	2 cut(s)	123, 330
BseXI	GCAGC	3 cut(s)	49, 52, 265
BseYI	CCCAGC	1 cut(s)	742
BshFI	GGCC	2 cut(s)	362, 486
BshTI	ACCGGT	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	98, 276
BsiSI	CCGG	2 cut(s)	248, 261
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	3 cut(s)	238, 244, 595
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	362, 486
Bso31I	GGTCTC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	98, 276
Bsp143I	GATC	2 cut(s)	118, 714
Bsp1720I	GCTNAGC	2 cut(s)	41, 172
BspACI	CCGC	3 cut(s)	205, 487, 690
BspANI	GGCC	2 cut(s)	362, 486
BspCNI	CTCAG	2 cut(s)	54, 117
BspLI	GGNNCC	3 cut(s)	115, 137, 265
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	131, 294, 363, 458
BssMI	GATC	2 cut(s)	118, 714
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	133, 459
Bst4CI	ACNGT	4 cut(s)	232, 383, 440, 768
Bst6I	CTCTTC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	41, 104, 172
BstF5I	GGATG	3 cut(s)	433, 586, 625
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	121, 717
BstMAI	GTCTC	3 cut(s)	238, 244, 595
BstMBI	GATC	2 cut(s)	118, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 359, 454
BstNI	CCWGG	2 cut(s)	133, 459
BstSCI	CCNGG	3 cut(s)	131, 246, 457
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	3 cut(s)	49, 52, 265
BstV2I	GAAGAC	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	362, 486
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	433, 586, 625
BtsIMutI	CAGTG	3 cut(s)	402, 450, 764
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	258, 263
CpoI	CGGWCCG	1 cut(s)	258
Csp6I	GTAC	3 cut(s)	4, 436, 477
CspAI	ACCGGT	1 cut(s)	260
CspCI	CAANNNNNGTGG	2 cut(s)	639, 674
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	1 cut(s)	58
CviQI	GTAC	3 cut(s)	4, 436, 477
DdeI	CTNAG	3 cut(s)	41, 104, 172
DpnI	GATC	2 cut(s)	120, 716
DpnII	GATC	2 cut(s)	118, 714
DraI	TTTAAA	1 cut(s)	499
EaeI	YGGCCR	2 cut(s)	360, 484
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	258, 263
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	131, 457
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	61
FaiI	YATR	7 cut(s)	59, 342, 471, 687, 721, 723, 725
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	63, 66, 279, 487
FokI	GGATG	3 cut(s)	440, 593, 632
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	4 cut(s)	63, 66, 279, 487
FspBI	CTAG	2 cut(s)	83, 756
FspI	TGCGCA	1 cut(s)	151
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	4 cut(s)	63, 66, 279, 487
GsaI	CCCAGC	1 cut(s)	746
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	2 cut(s)	362, 486
HapII	CCGG	2 cut(s)	248, 261
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	3 cut(s)	219, 305, 514
HpaII	CCGG	2 cut(s)	248, 261
HphI	GGTGA	2 cut(s)	310, 704
Hpy166II	GTNNAC	3 cut(s)	392, 479, 764
Hpy188I	TCNGA	5 cut(s)	107, 118, 310, 419, 779
Hpy188III	TCNNGA	5 cut(s)	266, 533, 617, 712, 756
Hpy8I	GTNNAC	3 cut(s)	392, 479, 764
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	568, 604, 655
HpyCH4III	ACNGT	4 cut(s)	232, 383, 440, 768
HpyCH4V	TGCA	2 cut(s)	17, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 359, 454
HpyF3I	CTNAG	3 cut(s)	41, 104, 172
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	118, 714
LmnI	GCTCC	4 cut(s)	101, 119, 535, 668
Lsp1109I	GCAGC	3 cut(s)	49, 52, 265
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	83, 756
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	120, 716
MboI	GATC	2 cut(s)	118, 714
MboII	GAAGA	3 cut(s)	69, 341, 792
MhlI	GDGCHC	2 cut(s)	98, 276
MluCI	AATT	5 cut(s)	163, 251, 411, 656, 796
MmeI	TCCRAC	1 cut(s)	646
MseI	TTAA	4 cut(s)	498, 543, 596, 705
MspI	CCGG	2 cut(s)	248, 261
MspR9I	CCNGG	3 cut(s)	133, 248, 459
MvaI	CCWGG	2 cut(s)	133, 459
MwoI	GCNNNNNNNGC	3 cut(s)	71, 359, 454
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	2 cut(s)	118, 714
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	115, 137, 265
NmeAIII	GCCGAG	2 cut(s)	203, 388
NsbI	TGCGCA	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	35
PfeI	GAWTC	3 cut(s)	219, 305, 514
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	64, 67, 280, 488
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	131, 457
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	2 cut(s)	131, 457
PspN4I	GGNNCC	3 cut(s)	115, 137, 265
PspPI	GGNCC	2 cut(s)	258, 263
RsaI	GTAC	3 cut(s)	5, 437, 478
RsaNI	GTAC	3 cut(s)	4, 436, 477
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	498, 543, 596, 705
SatI	GCNGC	4 cut(s)	63, 66, 279, 487
Sau3AI	GATC	2 cut(s)	118, 714
Sau96I	GGNCC	2 cut(s)	258, 263
ScrFI	CCNGG	3 cut(s)	133, 248, 459
SduI	GDGCHC	2 cut(s)	98, 276
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	2 cut(s)	258, 263
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	5 cut(s)	163, 251, 411, 656, 796
SsiI	CCGC	3 cut(s)	205, 487, 690
SspMI	CTAG	2 cut(s)	83, 756
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	3 cut(s)	131, 246, 457
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	232, 383, 440, 768
TaqI	TCGA	2 cut(s)	35, 682
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	5 cut(s)	163, 251, 411, 656, 796
TatI	WGTACW	3 cut(s)	3, 435, 476
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	3 cut(s)	219, 305, 514
Tru1I	TTAA	4 cut(s)	498, 543, 596, 705
Tru9I	TTAA	4 cut(s)	498, 543, 596, 705
TscAI	CASTG	3 cut(s)	402, 450, 771
TseI	GCWGC	3 cut(s)	62, 65, 278
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	402, 450, 771
VpaK11BI	GGWCC	2 cut(s)	258, 263
XbaI	TCTAGA	1 cut(s)	755
XspI	CTAG	2 cut(s)	83, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.