RLG00000010343

plastid-lipid-associated protein 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009105
Physical Location & Seq
Reverse (-)
826352 .. 831101
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010343

Sequence Viewer

Length: 1164 bp
ATGGGAGAAAATCAAAACCTGGGTTTGTACTTGGTTTGCAGTTTGATGATGATTGAGCGGGTTCGGCGGGTGTACGTGAATAAAATTTTGAGGCGATGCAAAAATGGGACATTGGCAACTTACTTTCCTTCCAAGAATACCTTTGGACTAGGCCCAGGCTGTCCAATTAATGCAAAGGACCACGTCGCACCGCCCGAACCACGCCATTGTCGATCTCAGATACCGTCAACGGAGCATCACCGACCATCTAGAACTTCAAACTGGAAACCAAGCAAAAACCCGACAAGGGTTCACCCAAAAACCAGATCGAAACCACCAAACACAGTCGGCAACACTGCTCGGAAGGCAAGCAAATCCGGATCCGAACCGCTTCCCATCCTAATCCATCGCCCACATCACCCAAAACGAACATTGGCCACTGTGTGTGAAGAGAAAGAGACGTGGCCTAACCTCCACCAATTGCCAAAGCCAAACGGGTCCGACATTGATTCCGCAAGCCCACGTGGCATAATCTCACCAATTATCATGTACTCTGCCCCTGCAAAACCCAATCTGTTTTTGGAAGCTCAGCATCATCAACTTCATGGCTGCTGCTCTCGCTTCTTCACTATCCCTATCGTGCTCCACACTCAGAGGAGGCTCCGATCCCTCAAAACCCAGGTGATAGATTCGGACAGAGGAGTTTTGCTGGAAAAGGAACAACATAAGGAGGTAGCTCAAGTGGCCGAGGCATTGCAGAACTACTGTGTTAGTGAACCAGTGAAATGCCCTCTAATTTTCGGAGATTGGGATGTGCTGTACTGTTCAGTGCCAACATCGCCTGGGGGTGGCTATAGGAGTACACTGGGCCGACTTGTTTTTAAAACAAAGGAGATGATTCAAGTTATTGAAGCTCCTGACATTGTTAAAAACAAGGTGTCCTTCTCTGCTTTTGGGTTCTTGGATGGAGAAGTCTCTTTAACAGGAAAGTTGAAGGCTCTGGATGATAAATGGGTTAAAGTTATTTTTGAACCACCAGAATTGAAGGTTGGAGCTTTGGACTTTCGATATGGCGGTGAAAGTGAGGTTAAACTCCAGATCACATATATAGATGAGAATATCAGGCTGGGGAAAGGCTCTAGAGGTTCACTGTTTGTTTTCAGAAGACAAGGTAAATCTAATTGA

Protein Analysis

388

Amino Acids

43.41

Weight (kDa)

9.68

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 215 - 380 1.9e-14 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 58
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 6 cut(s) 58, 67, 191, 368, 492, 1053
AclWI GGATC 3 cut(s) 354, 367, 639
AcoI YGGCCR 2 cut(s) 414, 723
AcsI RAATTY 1 cut(s) 84
AcvI CACGTG 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 423
AfaI GTAC 5 cut(s) 29, 74, 530, 800, 841
AfiI CCNNNNNNNGG 2 cut(s) 286, 827
AgsI TTSAA 6 cut(s) 258, 881, 890, 973, 1010, 1024
AjiI CACGTC 2 cut(s) 184, 441
AjnI CCWGG 4 cut(s) 18, 154, 657, 820
AjuI GAANNNNNNNTTGG 2 cut(s) 1011, 1043
AluBI AGCT 4 cut(s) 566, 716, 893, 1034
AluI AGCT 4 cut(s) 566, 716, 893, 1034
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 2 cut(s) 431, 958
AlwI GGATC 3 cut(s) 354, 367, 639
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 5 cut(s) 151, 414, 443, 723, 847
ApeKI GCWGC 2 cut(s) 588, 591
ApoI RAATTY 1 cut(s) 84
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 4 cut(s) 152, 178, 477, 847
AsuHPI GGTGA 6 cut(s) 230, 284, 389, 507, 673, 1067
AvaII GGWCC 2 cut(s) 178, 477
BalI TGGCCA 1 cut(s) 416
BamHI GGATCC 1 cut(s) 359
BbrPI CACGTG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 1150
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 575, 578
BccI CCATC 4 cut(s) 253, 383, 393, 938
BciT130I CCWGG 4 cut(s) 20, 156, 659, 822
BcoDI GTCTC 2 cut(s) 431, 958
BfaI CTAG 3 cut(s) 149, 249, 1119
BfmI CTRYAG 1 cut(s) 832
BglI GCCNNNNNGGC 1 cut(s) 504
BisI GCNGC 2 cut(s) 589, 592
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 2 cut(s) 590, 593
Bme1390I CCNGG 4 cut(s) 20, 156, 659, 822
Bme18I GGWCC 2 cut(s) 178, 477
BmgBI CACGTC 2 cut(s) 184, 441
BmgT120I GGNCC 4 cut(s) 152, 178, 477, 847
BmiI GGNNCC 3 cut(s) 361, 478, 641
BmrFI CCNGG 4 cut(s) 20, 156, 659, 822
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 3 cut(s) 86, 244, 580
BmuI ACTGGG 1 cut(s) 854
BpiI GAAGAC 1 cut(s) 1150
BpmI CTGGAG 1 cut(s) 1058
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 702
BsaAI YACGTR 2 cut(s) 76, 503
BsaJI CCNNGG 5 cut(s) 19, 154, 657, 726, 821
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 827
Bse1I ACTGG 3 cut(s) 266, 758, 849
Bse3DI GCAATG 1 cut(s) 731
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 4 cut(s) 20, 156, 659, 822
BseDI CCNNGG 5 cut(s) 19, 154, 657, 726, 821
BseGI GGATG 4 cut(s) 375, 796, 949, 988
BseLI CCNNNNNNNGG 2 cut(s) 286, 827
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 230, 581, 644
BseNI ACTGG 3 cut(s) 266, 758, 849
BseRI GAGGAG 2 cut(s) 649, 693
BseXI GCAGC 2 cut(s) 575, 578
BseYI CCCAGC 1 cut(s) 1105
BshFI GGCC 5 cut(s) 153, 416, 445, 725, 849
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 286, 827
BsmAI GTCTC 2 cut(s) 431, 958
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 5 cut(s) 153, 416, 445, 725, 849
Bsp1286I GDGCHC 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 5 cut(s) 212, 305, 359, 644, 1077
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 6 cut(s) 58, 67, 191, 368, 492, 1053
BspANI GGCC 5 cut(s) 153, 416, 445, 725, 849
BspCNI CTCAG 3 cut(s) 229, 580, 643
BspEI TCCGGA 1 cut(s) 356
BspLI GGNNCC 3 cut(s) 361, 478, 641
BspPI GGATC 3 cut(s) 354, 367, 639
BsrBI CCGCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 731
BsrI ACTGG 3 cut(s) 266, 758, 849
BssECI CCNNGG 5 cut(s) 19, 154, 657, 726, 821
BssMI GATC 5 cut(s) 212, 305, 359, 644, 1077
Bst2UI CCWGG 4 cut(s) 20, 156, 659, 822
Bst4CI ACNGT 6 cut(s) 225, 325, 421, 746, 803, 1131
Bst6I CTCTTC 1 cut(s) 423
BstBAI YACGTR 2 cut(s) 76, 503
BstC8I GCNNGC 2 cut(s) 349, 496
BstDEI CTNAG 3 cut(s) 216, 567, 630
BstF5I GGATG 4 cut(s) 375, 796, 949, 988
BstKTI GATC 5 cut(s) 215, 308, 362, 647, 1080
BstMAI GTCTC 2 cut(s) 431, 958
BstMBI GATC 5 cut(s) 212, 305, 359, 644, 1077
BstMWI GCNNNNNNNGC 6 cut(s) 64, 344, 504, 597, 722, 817
BstNI CCWGG 4 cut(s) 20, 156, 659, 822
BstSCI CCNGG 4 cut(s) 18, 154, 657, 820
BstSFI CTRYAG 1 cut(s) 832
BstV1I GCAGC 2 cut(s) 575, 578
BstV2I GAAGAC 1 cut(s) 1150
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 5 cut(s) 153, 416, 445, 725, 849
BtgZI GCGATG 3 cut(s) 109, 371, 801
BtrI CACGTC 2 cut(s) 184, 441
BtsCI GGATG 4 cut(s) 375, 796, 949, 988
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 6 cut(s) 333, 417, 765, 813, 842, 1127
Cac8I GCNNGC 2 cut(s) 349, 496
Cfr13I GGNCC 4 cut(s) 152, 178, 477, 847
Csp6I GTAC 5 cut(s) 28, 73, 529, 799, 840
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviAII CATG 2 cut(s) 526, 584
CviQI GTAC 5 cut(s) 28, 73, 529, 799, 840
DdeI CTNAG 3 cut(s) 216, 567, 630
DpnI GATC 5 cut(s) 214, 307, 361, 646, 1079
DpnII GATC 5 cut(s) 212, 305, 359, 644, 1077
DraI TTTAAA 1 cut(s) 862
DraIII CACNNNGTG 1 cut(s) 423
EaeI YGGCCR 2 cut(s) 414, 723
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 178, 477
Eco72I CACGTG 1 cut(s) 503
EcoRII CCWGG 4 cut(s) 18, 154, 657, 820
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 2 cut(s) 529, 587
FaiI YATR 9 cut(s) 509, 527, 585, 705, 834, 1050, 1084, 1086, 1088
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 905, 937
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 525, 583
FauI CCCGC 2 cut(s) 51, 60
Fnu4HI GCNGC 2 cut(s) 589, 592
FokI GGATG 4 cut(s) 362, 803, 956, 995
Fsp4HI GCNGC 2 cut(s) 589, 592
FspBI CTAG 3 cut(s) 149, 249, 1119
GluI GCNGC 2 cut(s) 589, 592
GsaI CCCAGC 1 cut(s) 1109
GsuI CTGGAG 1 cut(s) 1058
HaeIII GGCC 5 cut(s) 153, 416, 445, 725, 849
HapII CCGG 1 cut(s) 357
Hin1II CATG 2 cut(s) 529, 587
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 488, 668, 877
HpaII CCGG 1 cut(s) 357
HphI GGTGA 6 cut(s) 230, 284, 389, 507, 673, 1067
Hpy166II GTNNAC 6 cut(s) 73, 228, 292, 755, 842, 1127
Hpy188I TCNGA 9 cut(s) 219, 342, 364, 481, 633, 644, 673, 782, 1142
Hpy188III TCNNGA 6 cut(s) 249, 357, 896, 980, 1075, 1119
Hpy8I GTNNAC 6 cut(s) 73, 228, 292, 755, 842, 1127
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 138, 337, 931, 967, 1018
HpyCH4III ACNGT 6 cut(s) 225, 325, 421, 746, 803, 1131
HpyCH4IV ACGT 4 cut(s) 75, 183, 440, 502
HpyCH4V TGCA 5 cut(s) 39, 99, 173, 542, 736
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 344, 504, 597, 722, 817
HpyF3I CTNAG 3 cut(s) 216, 567, 630
HpySE526I ACGT 4 cut(s) 75, 183, 440, 502
Hsp92II CATG 2 cut(s) 529, 587
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 5 cut(s) 212, 305, 359, 644, 1077
LmnI GCTCC 5 cut(s) 232, 627, 645, 898, 1031
Lsp1109I GCAGC 2 cut(s) 575, 578
LweI GCATC 3 cut(s) 86, 244, 580
MaeI CTAG 3 cut(s) 149, 249, 1119
MaeII ACGT 4 cut(s) 75, 183, 440, 502
MalI GATC 5 cut(s) 214, 307, 361, 646, 1079
MbiI CCGCTC 1 cut(s) 58
MboI GATC 5 cut(s) 212, 305, 359, 644, 1077
MboII GAAGA 3 cut(s) 440, 595, 1155
MfeI CAATTG 1 cut(s) 458
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 624
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 7 cut(s) 84, 165, 458, 519, 774, 1019, 1159
MluNI TGGCCA 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 504, 1009
Mox20I TGGCCA 1 cut(s) 416
MroI TCCGGA 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 416
MseI TTAA 6 cut(s) 168, 861, 906, 959, 996, 1068
Msp20I TGGCCA 1 cut(s) 416
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 4 cut(s) 20, 156, 659, 822
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 4 cut(s) 20, 156, 659, 822
MwoI GCNNNNNNNGC 6 cut(s) 64, 344, 504, 597, 722, 817
NdeII GATC 5 cut(s) 212, 305, 359, 644, 1077
NlaIII CATG 2 cut(s) 529, 587
NlaIV GGNNCC 3 cut(s) 361, 478, 641
NmeAIII GCCGAG 1 cut(s) 751
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 208
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 488, 668, 877
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 2 cut(s) 590, 593
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
Ppu21I YACGTR 2 cut(s) 76, 503
PshBI ATTAAT 1 cut(s) 168
Psp6I CCWGG 4 cut(s) 18, 154, 657, 820
PspCI CACGTG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 1105
PspGI CCWGG 4 cut(s) 18, 154, 657, 820
PspN4I GGNNCC 3 cut(s) 361, 478, 641
PspPI GGNCC 4 cut(s) 152, 178, 477, 847
PsuI RGATCY 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 5 cut(s) 29, 74, 530, 800, 841
RsaNI GTAC 5 cut(s) 28, 73, 529, 799, 840
SaqAI TTAA 6 cut(s) 168, 861, 906, 959, 996, 1068
SatI GCNGC 2 cut(s) 589, 592
Sau3AI GATC 5 cut(s) 212, 305, 359, 644, 1077
Sau96I GGNCC 4 cut(s) 152, 178, 477, 847
ScrFI CCNGG 4 cut(s) 20, 156, 659, 822
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 3 cut(s) 86, 244, 580
SfcI CTRYAG 1 cut(s) 832
SinI GGWCC 2 cut(s) 178, 477
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 7 cut(s) 84, 165, 458, 519, 774, 1019, 1159
SsiI CCGC 6 cut(s) 58, 67, 191, 368, 492, 1053
SspMI CTAG 3 cut(s) 149, 249, 1119
StyD4I CCNGG 4 cut(s) 18, 154, 657, 820
TaaI ACNGT 6 cut(s) 225, 325, 421, 746, 803, 1131
TaiI ACGT 4 cut(s) 78, 186, 443, 505
TaqI TCGA 3 cut(s) 211, 308, 1045
TasI AATT 7 cut(s) 84, 165, 458, 519, 774, 1019, 1159
TatI WGTACW 4 cut(s) 27, 528, 798, 839
TfiI GAWTC 3 cut(s) 488, 668, 877
Tru1I TTAA 6 cut(s) 168, 861, 906, 959, 996, 1068
Tru9I TTAA 6 cut(s) 168, 861, 906, 959, 996, 1068
TscAI CASTG 6 cut(s) 340, 424, 765, 813, 849, 1134
TseI GCWGC 2 cut(s) 588, 591
TspDTI ATGAA 1 cut(s) 572
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 6 cut(s) 340, 424, 765, 813, 849, 1134
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 178, 477
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 1 cut(s) 84
XbaI TCTAGA 2 cut(s) 248, 1118
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 3 cut(s) 149, 249, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.