AT5G20120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012408
Physical Location & Seq
Forward (+)
6795314 .. 6797249
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20120.2

Sequence Viewer

Length: 567 bp
ATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGCAAAGACATAGCCAAGGTTATGCTTCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTAGGCCACAGCCTTTTTCTTTAGAGAATCCTAGAAGTAAAACCTGGGTTGAGATTTTGGAGAATGTGCTTTGGATTGCATCTGCTGTCTTCATTGTCTATTTTGGAGACAGGCACTCTAATATGATACATATTCTCTTACGTGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGTTGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCTTGGAGCATGAGAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCTGCTCTGCCTTTCATCACCCTACTCGGCATCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGACTCTCCCCCTTCTGTTCACATTGTTCATGGCATGCCTTGTTGTGTTCCCACATCTCATGATCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.56

Weight (kDa)

6.41

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM128 PF20479 48 - 171 3e-29 TMEM128 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20120 AT5G20120
fragaria_vesca FvH4_1g03550
malus_domestica MD02G1034700.v1.1 MD15G1175500.v1.1
prunus_persica Prupe.7G240600_v2.0.a1
pyrus_communis pycom02g02830 pycom15g15700
rosa_chinensis RchiOBHm_Chr2g0089051
rosa_laevigata RLG00000015987
rosa_multiflora Rmu_sc0005510.1_g000007
rosa_roxburghii Rroxscaffold_2G00152300
rosa_rugosa Rorug01G0487000 Rorug01G0487100
rosa_samantha Rh2AG042500 Rh2BG041000 Rh2CG042600 Rh2DG041600
rosa_wichuraiana Rw2G003510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 23
AciI CCGC 1 cut(s) 556
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 23, 452
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 260
AoxI GGCC 4 cut(s) 104, 421, 443, 536
ApoI RAATTY 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 86, 388
BbsI GAAGAC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 102, 132
Bme1390I CCNGG 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 5 cut(s) 82, 188, 235, 252, 417
BpiI GAAGAC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 55, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 452
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 55, 144
BseGI GGATG 3 cut(s) 94, 267, 285
BseLI CCNNNNNNNGG 2 cut(s) 23, 452
BseNI ACTGG 1 cut(s) 17
BshFI GGCC 4 cut(s) 106, 423, 445, 538
BslI CCNNNNNNNGG 2 cut(s) 23, 452
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 4 cut(s) 106, 423, 445, 538
Bsp143I GATC 3 cut(s) 79, 252, 522
BspACI CCGC 1 cut(s) 556
BspANI GGCC 4 cut(s) 106, 423, 445, 538
BspHI TCATGA 1 cut(s) 519
BspPI GGATC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 55, 144
BssMI GATC 3 cut(s) 79, 252, 522
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 97, 425, 496
BstF5I GGATG 3 cut(s) 94, 267, 285
BstKTI GATC 3 cut(s) 82, 255, 525
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 79, 252, 522
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 2 cut(s) 328, 498
BstSCI CCNGG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 4 cut(s) 106, 423, 445, 538
BtsCI GGATG 3 cut(s) 94, 267, 285
Cac8I GCNNGC 3 cut(s) 97, 425, 496
CciI TCATGA 1 cut(s) 519
Csp6I GTAC 1 cut(s) 34
CviAII CATG 5 cut(s) 325, 340, 490, 495, 520
CviJI RGCY 8 cut(s) 54, 106, 112, 293, 423, 445, 456, 538
CviKI_1 RGCY 8 cut(s) 54, 106, 112, 293, 423, 445, 456, 538
CviQI GTAC 1 cut(s) 34
DpnI GATC 3 cut(s) 81, 254, 524
DpnII GATC 3 cut(s) 79, 252, 522
Eco130I CCWWGG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 5 cut(s) 328, 343, 493, 498, 523
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FatI CATG 5 cut(s) 324, 339, 489, 494, 519
FbaI TGATCA 1 cut(s) 522
FokI GGATG 3 cut(s) 101, 274, 292
FspBI CTAG 2 cut(s) 102, 132
HaeIII GGCC 4 cut(s) 106, 423, 445, 538
Hin1II CATG 5 cut(s) 328, 343, 493, 498, 523
HinfI GANTC 2 cut(s) 127, 463
HphI GGTGA 2 cut(s) 86, 388
Hpy166II GTNNAC 2 cut(s) 298, 480
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 4 cut(s) 83, 277, 460, 520
Hpy8I GTNNAC 2 cut(s) 298, 480
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 339, 482
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 5 cut(s) 328, 343, 493, 498, 523
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 3 cut(s) 79, 252, 522
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 7 cut(s) 30, 54, 130, 157, 196, 437, 520
LweI GCATC 5 cut(s) 82, 188, 235, 252, 417
MaeI CTAG 2 cut(s) 102, 132
MaeII ACGT 1 cut(s) 241
MalI GATC 3 cut(s) 81, 254, 524
MboI GATC 3 cut(s) 79, 252, 522
MboII GAAGA 1 cut(s) 181
MluCI AATT 1 cut(s) 530
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 2 cut(s) 79, 549
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
NdeII GATC 3 cut(s) 79, 252, 522
NlaIII CATG 5 cut(s) 328, 343, 493, 498, 523
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 2 cut(s) 328, 498
PaeI GCATGC 1 cut(s) 498
PagI TCATGA 1 cut(s) 519
PceI AGGCCT 1 cut(s) 538
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 23
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 242
PsiI TTATAA 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
Sau3AI GATC 3 cut(s) 79, 252, 522
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 145
SetI ASST 5 cut(s) 61, 146, 244, 295, 350
SfaNI GCATC 5 cut(s) 82, 188, 235, 252, 417
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 498
Sse9I AATT 1 cut(s) 530
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 1 cut(s) 556
SspMI CTAG 2 cut(s) 102, 132
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 244
TasI AATT 1 cut(s) 530
TfiI GAWTC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 181, 382, 405, 478
Van91I CCANNNNNTGG 1 cut(s) 23
XapI RAATTY 1 cut(s) 530
XceI RCATGY 2 cut(s) 328, 498
XspI CTAG 2 cut(s) 102, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.