Prupe.7G240600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012408
Physical Location & Seq
Forward (+)
20713373 .. 20716230
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G240600.1

Sequence Viewer

Length: 597 bp
ATGTCGGGGGGTACACCAACTGGGGCTGGATATATGAGGCAGAGGCATAGCCAGGGGTATGCATCGAGTGGCGATGATCTTGAGGATGATGCATGTTCGGTTATGCGCACTTCGTCCCCACGAAGTCCGAGAGTTTGGTCACGGATTGAGATTGTAGAGAATGTCCTTTGGCTTGCCTCAGCAGCATTCATTGTTTACTATGGTGATAGGAAATCCAACTTGATATATCTCTTCTGGCATGATGACCGAATCAGAAGATTGCCTTTATACCTTGGAACGGTGGGCGTGGTTTTCAACATTATCATCTTCTGTTATACAAGTATGTCTGCATGGAGTGTGAGGAGATTTGATGAAAAATGGGAATTGGCTAGTATATCTGCTCTGCCATTTGTGACACTACTTGGCGTCATCTCCTTTTGCTTGTTCTGCTTCGCTTTGTGGCCAATATGGAGTTTCTTGACCCTTCCTCTTCTGTTCACACTGTTTATGGCATGCATGGTTATATGTCCATACATTATAATTGGGATATTTAGGCAACAACATGATGTGCTGCGTATAGATTATGCCTCCTCGGAATTAAGTGAGAAACAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.78

Weight (kDa)

6.81

Isoelectric Point (pI)

60.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20120 AT5G20120
fragaria_vesca FvH4_1g03550
malus_domestica MD02G1034700.v1.1 MD15G1175500.v1.1
prunus_persica Prupe.7G240600_v2.0.a1
pyrus_communis pycom02g02830 pycom15g15700
rosa_chinensis RchiOBHm_Chr2g0089051
rosa_laevigata RLG00000015987
rosa_multiflora Rmu_sc0005510.1_g000007
rosa_roxburghii Rroxscaffold_2G00152300
rosa_rugosa Rorug01G0487000 Rorug01G0487100
rosa_samantha Rh2AG042500 Rh2BG041000 Rh2CG042600 Rh2DG041600
rosa_wichuraiana Rw2G003510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc16I TGCGCA 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 1 cut(s) 51
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 2 cut(s) 182, 550
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 215
BalI TGGCCA 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 194, 537
BciT130I CCWGG 1 cut(s) 53
BfaI CTAG 1 cut(s) 369
BisI GCNGC 2 cut(s) 183, 551
BlsI GCNGC 2 cut(s) 184, 552
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 71, 79
BmuI ACTGGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 52, 271, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 52, 271, 570
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 355, 559
BseXI GCAGC 2 cut(s) 194, 537
BshFI GGCC 1 cut(s) 442
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 191
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 52, 271, 570
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 280, 483
Bst6I CTCTTC 2 cut(s) 236, 474
BstACI GRCGYC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 174, 493
BstDEI CTNAG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 182, 426
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 96, 495
BstSCI CCNGG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 194, 537
BsuRI GGCC 1 cut(s) 442
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 479
Cac8I GCNNGC 2 cut(s) 174, 493
CfoI GCGC 1 cut(s) 108
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 12
CviAII CATG 6 cut(s) 93, 239, 330, 492, 496, 542
CviJI RGCY 5 cut(s) 26, 51, 172, 368, 442
CviKI_1 RGCY 5 cut(s) 26, 51, 172, 368, 442
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 178
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 236, 474
EarI CTCTTC 2 cut(s) 236, 474
Eco130I CCWWGG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 3 cut(s) 64, 94, 497
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 6 cut(s) 96, 242, 333, 495, 499, 545
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 100
FatI CATG 6 cut(s) 92, 238, 329, 491, 495, 541
Fnu4HI GCNGC 2 cut(s) 183, 551
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 183, 551
FspAI RTGCGCAY 1 cut(s) 107
FspBI CTAG 1 cut(s) 369
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 1 cut(s) 107
GluI GCNGC 2 cut(s) 183, 551
HaeIII GGCC 1 cut(s) 442
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 6 cut(s) 96, 242, 333, 495, 499, 545
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 1 cut(s) 249
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 3 cut(s) 14, 196, 477
Hpy188I TCNGA 3 cut(s) 129, 254, 574
Hpy188III TCNNGA 2 cut(s) 80, 457
Hpy8I GTNNAC 3 cut(s) 14, 196, 477
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 2 cut(s) 280, 483
HpyCH4V TGCA 4 cut(s) 62, 92, 329, 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 426
HpyF3I CTNAG 1 cut(s) 178
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 6 cut(s) 96, 242, 333, 495, 499, 545
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 6, 12, 38, 65, 220
Lsp1109I GCAGC 2 cut(s) 194, 537
LweI GCATC 2 cut(s) 71, 79
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 2 cut(s) 138, 391
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 4 cut(s) 223, 267, 298, 461
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 3 cut(s) 362, 519, 575
MluNI TGGCCA 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 8 cut(s) 30, 36, 76, 187, 333, 477, 577, 580
Mox20I TGGCCA 1 cut(s) 442
Mph1103I ATGCAT 3 cut(s) 64, 94, 497
MscI TGGCCA 1 cut(s) 442
MseI TTAA 1 cut(s) 578
Msp20I TGGCCA 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 182, 426
NdeII GATC 1 cut(s) 76
NlaIII CATG 6 cut(s) 96, 242, 333, 495, 499, 545
NmuCI GTSAC 2 cut(s) 138, 391
NsbI TGCGCA 1 cut(s) 107
NsiI ATGCAT 3 cut(s) 64, 94, 497
NspI RCATGY 2 cut(s) 96, 495
PaeI GCATGC 1 cut(s) 495
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 2 cut(s) 184, 552
PsiI TTATAA 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 2 cut(s) 183, 551
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 53
SetI ASST 1 cut(s) 273
SfaNI GCATC 2 cut(s) 71, 79
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 495
Sse9I AATT 3 cut(s) 362, 519, 575
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 280, 483
TaqI TCGA 1 cut(s) 65
TaqII GACCGA 1 cut(s) 261
TasI AATT 3 cut(s) 362, 519, 575
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 2 cut(s) 138, 391
TseI GCWGC 2 cut(s) 182, 550
Tsp45I GTSAC 2 cut(s) 138, 391
TspDTI ATGAA 2 cut(s) 178, 366
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 1 cut(s) 486
XceI RCATGY 2 cut(s) 96, 495
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 3 cut(s) 64, 94, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.