Rorug01G0487000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012408
Physical Location & Seq
Forward (+)
57291638 .. 57292467
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0487000.1

Sequence Viewer

Length: 741 bp
ATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTAAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATCGATCTCAATTTTGGGCCCACTAGTTCTACTGATGCTGGTGGATCCATCGACATCAATTTTGGGTCCACTAGTTCTACCGATGATGGTAGATCCATTAATCTCAACTTTAGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

26.8

Weight (kDa)

5.11

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 48 - 109 1.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20120 AT5G20120
fragaria_vesca FvH4_1g03550
malus_domestica MD02G1034700.v1.1 MD15G1175500.v1.1
prunus_persica Prupe.7G240600_v2.0.a1
pyrus_communis pycom02g02830 pycom15g15700
rosa_chinensis RchiOBHm_Chr2g0089051
rosa_laevigata RLG00000015987
rosa_multiflora Rmu_sc0005510.1_g000007
rosa_roxburghii Rroxscaffold_2G00152300
rosa_rugosa Rorug01G0487000 Rorug01G0487100
rosa_samantha Rh2AG042500 Rh2BG041000 Rh2CG042600 Rh2DG041600
rosa_wichuraiana Rw2G003510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 609
AccIII TCCGGA 1 cut(s) 725
AciI CCGC 2 cut(s) 47, 675
AclI AACGTT 1 cut(s) 696
AclWI GGATC 6 cut(s) 195, 384, 397, 432, 445, 480
AcuI CTGAAG 1 cut(s) 641
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 2 cut(s) 145, 382
AfeI AGCGCT 1 cut(s) 646
AfiI CCNNNNNNNGG 1 cut(s) 596
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 1 cut(s) 572
AhlI ACTAGT 3 cut(s) 368, 416, 464
AjnI CCWGG 1 cut(s) 561
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 5 cut(s) 37, 107, 253, 709, 731
AluI AGCT 5 cut(s) 37, 107, 253, 709, 731
Alw21I GWGCWC 4 cut(s) 39, 231, 597, 711
Alw44I GTGCAC 1 cut(s) 593
AlwI GGATC 6 cut(s) 195, 384, 397, 432, 445, 480
Ama87I CYCGRG 1 cut(s) 315
Aor13HI TCCGGA 1 cut(s) 725
Aor51HI AGCGCT 1 cut(s) 646
AoxI GGCC 1 cut(s) 410
ApaI GGGCCC 1 cut(s) 414
ApaLI GTGCAC 1 cut(s) 593
ApeKI GCWGC 3 cut(s) 104, 347, 731
ArsI GACNNNNNNTTYG 2 cut(s) 437, 469
AseI ATTAAT 1 cut(s) 492
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 3 cut(s) 410, 411, 459
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 1 cut(s) 459
BaeGI GKGCMC 4 cut(s) 218, 360, 414, 597
BamHI GGATCC 2 cut(s) 389, 437
BanII GRGCYC 4 cut(s) 39, 316, 414, 711
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 4 cut(s) 39, 231, 597, 711
BbvI GCAGC 3 cut(s) 116, 334, 718
BccI CCATC 6 cut(s) 144, 226, 401, 449, 473, 730
BceAI ACGGC 2 cut(s) 126, 613
BciT130I CCWGG 1 cut(s) 563
BcuI ACTAGT 3 cut(s) 368, 416, 464
BfaI CTAG 4 cut(s) 369, 417, 465, 739
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 648
BglII AGATCT 1 cut(s) 240
BisI GCNGC 3 cut(s) 105, 348, 732
BlpI GCTNAGC 1 cut(s) 710
BlsI GCNGC 3 cut(s) 106, 349, 733
Bme1390I CCNGG 1 cut(s) 563
Bme18I GGWCC 1 cut(s) 459
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 410, 411, 459
BmiI GGNNCC 6 cut(s) 60, 299, 391, 412, 439, 460
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 1 cut(s) 418
BpmI CTGGAG 4 cut(s) 147, 233, 336, 543
Bpu10I CCTNAGC 1 cut(s) 670
Bpu1102I GCTNAGC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 725
Bsa29I ATCGAT 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 360, 633
BsaWI WCCGGW 1 cut(s) 725
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse1I ACTGG 4 cut(s) 259, 353, 388, 526
BseAI TCCGGA 1 cut(s) 725
BseBI CCWGG 1 cut(s) 563
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 360, 633
BseGI GGATG 2 cut(s) 533, 722
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMII CTCAG 2 cut(s) 684, 724
BseNI ACTGG 4 cut(s) 259, 353, 388, 526
BseRI GAGGAG 3 cut(s) 98, 564, 567
BseSI GKGCMC 4 cut(s) 218, 360, 414, 597
BseXI GCAGC 3 cut(s) 116, 334, 718
BshFI GGCC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 4 cut(s) 39, 231, 597, 711
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 596
BsnI GGCC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 315
Bsp120I GGGCCC 1 cut(s) 410
Bsp1286I GDGCHC 8 cut(s) 39, 218, 231, 316, 360, 414, 597, 711
Bsp13I TCCGGA 1 cut(s) 725
Bsp143I GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
Bsp1720I GCTNAGC 1 cut(s) 710
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 47, 675
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 683, 723
BspDI ATCGAT 1 cut(s) 396
BspEI TCCGGA 1 cut(s) 725
BspLI GGNNCC 6 cut(s) 60, 299, 391, 412, 439, 460
BspPI GGATC 6 cut(s) 195, 384, 397, 432, 445, 480
BsrI ACTGG 4 cut(s) 259, 353, 388, 526
BssECI CCNNGG 2 cut(s) 360, 633
BssMI GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
BssNI GRCGYC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 1 cut(s) 686
Bst6I CTCTTC 1 cut(s) 582
BstACI GRCGYC 1 cut(s) 606
BstDEI CTNAG 2 cut(s) 670, 710
BstDSI CCRYGG 1 cut(s) 360
BstEII GGTNACC 2 cut(s) 614, 677
BstF5I GGATG 2 cut(s) 533, 722
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 7 cut(s) 190, 243, 392, 400, 440, 488, 559
BstMBI GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 272
BstPI GGTNACC 2 cut(s) 614, 677
BstSCI CCNGG 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 4 cut(s) 218, 360, 414, 597
BstV1I GCAGC 3 cut(s) 116, 334, 718
BstX2I RGATCY 5 cut(s) 187, 240, 389, 437, 485
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 5 cut(s) 187, 240, 389, 437, 485
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 1 cut(s) 412
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 533, 722
BtsIMutI CAGTG 2 cut(s) 360, 691
CfoI GCGC 1 cut(s) 647
Cfr13I GGNCC 3 cut(s) 410, 411, 459
ClaI ATCGAT 1 cut(s) 396
Csp6I GTAC 2 cut(s) 144, 381
CviAII CATG 3 cut(s) 124, 269, 361
CviQI GTAC 2 cut(s) 144, 381
DdeI CTNAG 2 cut(s) 670, 710
DpnI GATC 7 cut(s) 189, 242, 391, 399, 439, 487, 558
DpnII GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 2 cut(s) 37, 709
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 4 cut(s) 39, 316, 414, 711
Eco47I GGWCC 1 cut(s) 459
Eco47III AGCGCT 1 cut(s) 646
Eco53kI GAGCTC 2 cut(s) 37, 709
Eco57I CTGAAG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 2 cut(s) 614, 677
EcoICRI GAGCTC 2 cut(s) 37, 709
EcoO65I GGTNACC 2 cut(s) 614, 677
EcoRII CCWGG 1 cut(s) 561
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 4 cut(s) 39, 316, 414, 711
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 127, 272, 364
FaiI YATR 4 cut(s) 125, 264, 270, 362
FatI CATG 3 cut(s) 123, 268, 360
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 105, 348, 732
FokI GGATG 2 cut(s) 520, 709
FriOI GRGCYC 4 cut(s) 39, 316, 414, 711
Fsp4HI GCNGC 3 cut(s) 105, 348, 732
FspBI CTAG 4 cut(s) 369, 417, 465, 739
GlaI GCGC 1 cut(s) 646
GluI GCNGC 3 cut(s) 105, 348, 732
GsuI CTGGAG 4 cut(s) 147, 233, 336, 543
HaeII RGCGCY 1 cut(s) 648
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 726
HhaI GCGC 1 cut(s) 647
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 3 cut(s) 127, 272, 364
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HinfI GANTC 2 cut(s) 154, 177
HpaII CCGG 1 cut(s) 726
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 2 cut(s) 462, 595
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 6 cut(s) 164, 236, 301, 317, 704, 726
Hpy8I GTNNAC 2 cut(s) 462, 595
HpyAV CCTTC 2 cut(s) 616, 632
HpyCH4III ACNGT 1 cut(s) 686
HpyCH4IV ACGT 4 cut(s) 198, 306, 606, 696
HpyCH4V TGCA 3 cut(s) 25, 541, 595
HpyF3I CTNAG 2 cut(s) 670, 710
HpySE526I ACGT 4 cut(s) 198, 306, 606, 696
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 3 cut(s) 127, 272, 364
HspAI GCGC 1 cut(s) 645
Kpn2I TCCGGA 1 cut(s) 725
Kzo9I GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
LmnI GCTCC 4 cut(s) 34, 42, 355, 728
Lsp1109I GCAGC 3 cut(s) 116, 334, 718
LweI GCATC 1 cut(s) 418
MaeI CTAG 4 cut(s) 369, 417, 465, 739
MaeII ACGT 4 cut(s) 198, 306, 606, 696
MaeIII GTNAC 3 cut(s) 614, 653, 677
MalI GATC 7 cut(s) 189, 242, 391, 399, 439, 487, 558
MboI GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
MboII GAAGA 1 cut(s) 569
MflI RGATCY 5 cut(s) 187, 240, 389, 437, 485
MhlI GDGCHC 8 cut(s) 39, 218, 231, 316, 360, 414, 597, 711
MluCI AATT 2 cut(s) 403, 451
MroI TCCGGA 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 2 cut(s) 210, 492
MspA1I CMGCKG 2 cut(s) 107, 253
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 563
MvaI CCWGG 1 cut(s) 563
NcoI CCATGG 1 cut(s) 360
NdeII GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
NlaIII CATG 3 cut(s) 127, 272, 364
NlaIV GGNNCC 6 cut(s) 60, 299, 391, 412, 439, 460
NspI RCATGY 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 315
PciI ACATGT 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 154, 177
PkrI GCNGC 3 cut(s) 106, 349, 733
PscI ACATGT 1 cut(s) 268
PshBI ATTAAT 1 cut(s) 492
Psp124BI GAGCTC 2 cut(s) 39, 711
Psp1406I AACGTT 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 561
PspEI GGTNACC 2 cut(s) 614, 677
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 6 cut(s) 60, 299, 391, 412, 439, 460
PspOMI GGGCCC 1 cut(s) 410
PspPI GGNCC 3 cut(s) 410, 411, 459
PsuI RGATCY 5 cut(s) 187, 240, 389, 437, 485
PvuII CAGCTG 2 cut(s) 107, 253
RsaI GTAC 2 cut(s) 145, 382
RsaNI GTAC 2 cut(s) 144, 381
SacI GAGCTC 2 cut(s) 39, 711
SaqAI TTAA 2 cut(s) 210, 492
SatI GCNGC 3 cut(s) 105, 348, 732
Sau3AI GATC 7 cut(s) 187, 240, 389, 397, 437, 485, 556
Sau96I GGNCC 3 cut(s) 410, 411, 459
ScrFI CCNGG 1 cut(s) 563
SduI GDGCHC 8 cut(s) 39, 218, 231, 316, 360, 414, 597, 711
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 459
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 2 cut(s) 315, 704
SmoI CTYRAG 2 cut(s) 315, 704
SpeI ACTAGT 3 cut(s) 368, 416, 464
Sse9I AATT 2 cut(s) 403, 451
SsiI CCGC 2 cut(s) 47, 675
SspMI CTAG 4 cut(s) 369, 417, 465, 739
SstI GAGCTC 2 cut(s) 39, 711
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 686
TaiI ACGT 4 cut(s) 201, 309, 609, 699
TaqI TCGA 3 cut(s) 316, 396, 444
TasI AATT 2 cut(s) 403, 451
TfiI GAWTC 2 cut(s) 154, 177
Tru1I TTAA 2 cut(s) 210, 492
Tru9I TTAA 2 cut(s) 210, 492
TscAI CASTG 2 cut(s) 360, 691
TseI GCWGC 3 cut(s) 104, 347, 731
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 2 cut(s) 360, 691
VneI GTGCAC 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 459
VspI ATTAAT 1 cut(s) 492
XceI RCATGY 1 cut(s) 272
XhoI CTCGAG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 4 cut(s) 369, 417, 465, 739
ZraI GACGTC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.