MD02G1034700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012408
Physical Location & Seq
Reverse (-)
2656742 .. 2659474
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1034700.v1.1.491

Sequence Viewer

Length: 594 bp
ATGTCGGGTGGTACGCCAACTGGGGCCGGATATATGAGGCAGAGGCATAGCCAGGGATATGCATCGAGCGGCGATGATCTTGAGGATGATGCATGCTCAGTTATGCGCTCTCCGTCCCCACAAAGTCCGAAAGTTTGGTCGCGGATTGAGATTTTGGAGAATGCCCTTTGGCTTGCCTCAGCAGCATTCATTGTGTACTATGGTGACAGGAAATCCAATATGATATATATCTTATGCCATGATGAGCGAATTAGAAGATTGCCTTTATACCTTGGGATGGTGGGCGTAGTTTTAAACATTATCATCTTCTTTTATACGAGTATGTCGGCATGGAGCGTAAGGAGATTTGACGAGAAATGGGAATTAGAAAGTATAACTGCTCTGCCGTTTGTGACGCTACTTGGCGGCATCTCATTTTGCTTCTTCTGCTTTGCTTTGTGGCCAATATGGAGTTTCTTGACGCTTCCTCTTTTGTTCACGCTGTTTATGGCAGGCATGGTTATATGTCCATACATTATAATTGGGATATTTAGGCAACAGCATGATGTTCTGCGTACAGATTATGCCTCGGAGTTAGGTGAGAAACATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.56

Weight (kDa)

6.06

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM128 PF20479 48 - 171 1e-30 TMEM128 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20120 AT5G20120
fragaria_vesca FvH4_1g03550
malus_domestica MD02G1034700.v1.1 MD15G1175500.v1.1
prunus_persica Prupe.7G240600_v2.0.a1
pyrus_communis pycom02g02830 pycom15g15700
rosa_chinensis RchiOBHm_Chr2g0089051
rosa_laevigata RLG00000015987
rosa_multiflora Rmu_sc0005510.1_g000007
rosa_roxburghii Rroxscaffold_2G00152300
rosa_rugosa Rorug01G0487000 Rorug01G0487100
rosa_samantha Rh2AG042500 Rh2BG041000 Rh2CG042600 Rh2DG041600
rosa_wichuraiana Rw2G003510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 142
AciI CCGC 3 cut(s) 69, 142, 405
AcoI YGGCCR 1 cut(s) 440
AfaI GTAC 3 cut(s) 13, 197, 556
AfiI CCNNNNNNNGG 1 cut(s) 277
AjnI CCWGG 1 cut(s) 51
AoxI GGCC 2 cut(s) 24, 440
ApeKI GCWGC 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 215, 590
BalI TGGCCA 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 1 cut(s) 53
BisI GCNGC 3 cut(s) 70, 183, 406
BlsI GCNGC 3 cut(s) 71, 184, 407
Bme1390I CCNGG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 71, 79, 417
BmuI ACTGGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 2 cut(s) 61, 227
BsaJI CCNNGG 3 cut(s) 52, 271, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 2 cut(s) 61, 227
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 3 cut(s) 52, 271, 567
BseGI GGATG 2 cut(s) 91, 282
BseJI GATNNNNATC 2 cut(s) 61, 227
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 111, 192
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 26, 442
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 2 cut(s) 166, 185
BsnI GGCC 2 cut(s) 26, 442
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 69, 142, 405
BspANI GGCC 2 cut(s) 26, 442
BspCNI CTCAG 2 cut(s) 110, 191
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 52, 271, 567
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 94, 174, 493
BstDEI CTNAG 2 cut(s) 97, 178
BstF5I GGATG 2 cut(s) 91, 282
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 182, 426
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 51
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 26, 442
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 91, 282
Cac8I GCNNGC 3 cut(s) 94, 174, 493
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 2 cut(s) 403, 469
Csp6I GTAC 3 cut(s) 12, 196, 555
CviAII CATG 5 cut(s) 93, 239, 330, 496, 542
CviJI RGCY 4 cut(s) 26, 51, 172, 442
CviKI_1 RGCY 4 cut(s) 26, 51, 172, 442
CviQI GTAC 3 cut(s) 12, 196, 555
DdeI CTNAG 2 cut(s) 97, 178
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DraI TTTAAA 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 2 cut(s) 64, 94
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 5 cut(s) 96, 242, 333, 499, 545
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 100
FatI CATG 5 cut(s) 92, 238, 329, 495, 541
Fnu4HI GCNGC 3 cut(s) 70, 183, 406
FokI GGATG 2 cut(s) 98, 289
Fsp4HI GCNGC 3 cut(s) 70, 183, 406
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 70, 183, 406
HaeIII GGCC 2 cut(s) 26, 442
HapII CCGG 1 cut(s) 27
HgaI GACGC 2 cut(s) 403, 469
HhaI GCGC 1 cut(s) 108
Hin1II CATG 5 cut(s) 96, 242, 333, 499, 545
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 215, 590
Hpy166II GTNNAC 2 cut(s) 196, 477
Hpy188I TCNGA 2 cut(s) 129, 571
Hpy188III TCNNGA 2 cut(s) 80, 457
Hpy8I GTNNAC 2 cut(s) 196, 477
HpyCH4V TGCA 2 cut(s) 62, 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 426
HpyF3I CTNAG 2 cut(s) 97, 178
Hsp92II CATG 5 cut(s) 96, 242, 333, 499, 545
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 6 cut(s) 6, 38, 40, 65, 193, 477
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 3 cut(s) 71, 79, 417
MaeIII GTNAC 2 cut(s) 203, 391
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 69
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 267, 298, 415
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 3 cut(s) 249, 362, 519
MluNI TGGCCA 1 cut(s) 442
MnlI CCTC 6 cut(s) 30, 36, 76, 187, 477, 577
Mox20I TGGCCA 1 cut(s) 442
Mph1103I ATGCAT 2 cut(s) 64, 94
MscI TGGCCA 1 cut(s) 442
MseI TTAA 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 442
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 2 cut(s) 166, 185
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 182, 426
NdeII GATC 1 cut(s) 76
NlaIII CATG 5 cut(s) 96, 242, 333, 499, 545
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 203, 391
NsiI ATGCAT 2 cut(s) 64, 94
NspI RCATGY 1 cut(s) 96
PaeI GCATGC 1 cut(s) 96
PctI GAATGC 2 cut(s) 166, 185
PkrI GCNGC 3 cut(s) 71, 184, 407
PsiI TTATAA 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 24
RsaI GTAC 3 cut(s) 13, 197, 556
RsaNI GTAC 3 cut(s) 12, 196, 555
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 3 cut(s) 70, 183, 406
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 53
SetI ASST 2 cut(s) 273, 580
SfaNI GCATC 3 cut(s) 71, 79, 417
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 96
Sse9I AATT 3 cut(s) 249, 362, 519
SsiI CCGC 3 cut(s) 69, 142, 405
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 271
TaqI TCGA 1 cut(s) 65
TasI AATT 3 cut(s) 249, 362, 519
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 72, 408
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TseFI GTSAC 2 cut(s) 203, 391
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 2 cut(s) 203, 391
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 102
XceI RCATGY 1 cut(s) 96
Zsp2I ATGCAT 2 cut(s) 64, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.