AT5G20180

Belongs to the bacterial ribosomal protein bL36 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010220
Physical Location & Seq
Forward (+)
6810908 .. 6812186
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20180.1

Sequence Viewer

Length: 312 bp
ATGAAGGTGAGATCATCTGTGAAGAAGATGTGTGAGTTTTGTAAAACAGTGAAACGTCGTGGACGTGTGTATGTTATATGCTCTTCCAATCCTAAGCACAAGCAAAGACAAGGGTTCAGTTCCTTTGCTTATGAAGGAATTACACCTTCCCCTTTGTTTGCTGAGCCGATTGCTAGTCAGGAGTTGGTGAGGCTGCCTGGTCAGGGGGTATCAGCCGGACTGGCATCACTTTTACACAAAAGGCCTATGCCAACAGCGTATTTCGGATGGAGGTCTGGTCTTGCATCCATTCTCTTCAAACAAGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

103

Amino Acids

11.43

Weight (kDa)

10.45

Isoelectric Point (pI)

65.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 1 - 38 5.2e-22 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 298
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 196
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 19, 199
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 233, 293
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 272, 284
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 11
Bsp1720I GCTNAGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 225
BssMI GATC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 2 cut(s) 88, 299
BstDEI CTNAG 2 cut(s) 93, 162
BstF5I GGATG 2 cut(s) 272, 284
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 244
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 272, 284
BtsIMutI CAGTG 1 cut(s) 54
CviJI RGCY 4 cut(s) 166, 193, 215, 244
CviKI_1 RGCY 4 cut(s) 166, 193, 215, 244
DdeI CTNAG 2 cut(s) 93, 162
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 88, 299
EarI CTCTTC 2 cut(s) 88, 299
Eco147I AGGCCT 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 196
FaiI YATR 5 cut(s) 72, 77, 79, 132, 248
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 2 cut(s) 271, 279
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 216
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 19, 199
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 128, 156
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 55, 64
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 93, 162
HpySE526I ACGT 2 cut(s) 55, 64
Kzo9I GATC 1 cut(s) 11
LguI GCTCTTC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 164, 183, 188, 206, 210, 229, 261
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 2 cut(s) 233, 293
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 55, 64
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 4 cut(s) 34, 37, 75, 286
MluCI AATT 2 cut(s) 138, 307
MnlI CCTC 2 cut(s) 183, 264
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 11
PceI AGGCCT 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PkrI GCNGC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 88
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 198
SetI ASST 5 cut(s) 9, 58, 67, 148, 275
SfaNI GCATC 2 cut(s) 233, 293
Sse9I AATT 2 cut(s) 138, 307
SseBI AGGCCT 1 cut(s) 244
SspMI CTAG 1 cut(s) 174
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 58, 67
TasI AATT 2 cut(s) 138, 307
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 17, 147
TspRI CASTG 1 cut(s) 54
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.