Rw2G002960

Belongs to the bacterial ribosomal protein bL36 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010220
Physical Location & Seq
Reverse (-)
2782078 .. 2784508
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002960.1

Sequence Viewer

Length: 309 bp
ATGAAGGTGCGATCATCGGTGAAAAAGATGTGCGAGTTTTGTAAGACAATTAAACGCCGTGGACGTGTTTATGTGTACTGCACAGCCAATCCTAAGCATAAGCAGAGACAGGGCATGTCTACATTTGCATATCAAGGCACTGATGCTCCCATGTCTGCAGAGACTAGTATCACCAAGCAGGAGAACAACTTTGGTCAGAGCTCTCACGTAGGTCTGGCATCTCTGATTCCCAGAAAGAATGAGCCGTCAATGCCCTCCCTTGGATGGAGGGTAGGCTTGGCATCCCTGCTGTTCAGAAAGGCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

102

Amino Acids

11.46

Weight (kDa)

10.35

Isoelectric Point (pI)

60.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 1 - 38 2.2e-21 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 260, 264
AflIII ACRYGT 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 164
AjiI CACGTC 1 cut(s) 65
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 100, 155
AoxI GGCC 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 31, 163
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 1 cut(s) 258
BceAI ACGGC 2 cut(s) 42, 229
BcoDI GTCTC 2 cut(s) 100, 155
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 65
BmsI GCATC 3 cut(s) 133, 227, 290
Bpu10I CCTNAGC 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 58, 259
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 264
BseDI CCNNGG 2 cut(s) 58, 259
BseGI GGATG 2 cut(s) 269, 281
BseLI CCNNNNNNNGG 2 cut(s) 260, 264
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 260, 264
BsmAI GTCTC 2 cut(s) 100, 155
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 11
BspANI GGCC 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 58, 259
BssMI GATC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 269, 281
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 100, 155
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 269, 281
BtsIMutI CAGTG 1 cut(s) 138
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 115, 151
CviJI RGCY 5 cut(s) 86, 201, 244, 276, 302
CviKI_1 RGCY 5 cut(s) 86, 201, 244, 276, 302
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 118, 154
FaiI YATR 5 cut(s) 72, 99, 116, 130, 152
FatI CATG 2 cut(s) 114, 150
FblI GTMKAC 1 cut(s) 119
FokI GGATG 2 cut(s) 268, 276
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 302
Hin1II CATG 2 cut(s) 118, 154
HinfI GANTC 1 cut(s) 226
HphI GGTGA 2 cut(s) 31, 163
Hpy166II GTNNAC 3 cut(s) 62, 76, 120
Hpy188I TCNGA 3 cut(s) 198, 225, 296
Hpy8I GTNNAC 3 cut(s) 62, 76, 120
HpyCH4IV ACGT 2 cut(s) 64, 207
HpyCH4V TGCA 3 cut(s) 81, 128, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 64, 207
Hsp92II CATG 2 cut(s) 118, 154
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 95, 164, 200, 244, 299
LweI GCATC 3 cut(s) 133, 227, 290
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 64, 207
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 2 cut(s) 48, 304
MnlI CCTC 2 cut(s) 261, 265
MseI TTAA 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 118, 154
NspI RCATGY 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 9, 67, 203, 210, 214
SfaNI GCATC 3 cut(s) 133, 227, 290
SfcI CTRYAG 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 2 cut(s) 48, 304
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 203
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 2 cut(s) 67, 210
TasI AATT 2 cut(s) 48, 304
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 145
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.