Rh2CG037900

Belongs to the bacterial ribosomal protein bL36 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010220
Physical Location & Seq
Reverse (-)
3039554 .. 3041009
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG037900.1

Sequence Viewer

Length: 315 bp
ATGAAGGTGCGATCATCGGTGAAGAAGATGTGCGAGTTTTGTAAGACAATTAAACGCCGTGGACGTGTTTATGTGTACTGCACAGCCAATCCTAAGCATAAGCAGAGACAGGGCATGTCTACATTTGCATATCAAGGCACTGATGCTCCCATGTATGCGGAGACTAGTATCACCAAGCAGGAGAACAACTTTGGTCAGAGCTCTCACGTTGGTCTGGCATCTCTGATACCCAGAAAGAATGAGCCGTCAATGCCCTCTCCGACCCTTGGATGGAGGGTAGGTTTGGCATCCCTGCTGTTCAGAAAGTCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

104

Amino Acids

11.75

Weight (kDa)

10.26

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 1 - 38 2.3e-21 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AciI CCGC 1 cut(s) 158
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 266, 270
AflIII ACRYGT 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 164
AjiI CACGTC 1 cut(s) 65
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 100, 155
AsuHPI GGTGA 2 cut(s) 31, 163
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 1 cut(s) 264
BceAI ACGGC 2 cut(s) 42, 229
BcoDI GTCTC 2 cut(s) 100, 155
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 65
BmsI GCATC 3 cut(s) 133, 227, 296
Bpu10I CCTNAGC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 58, 265
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 270
BseDI CCNNGG 2 cut(s) 58, 265
BseGI GGATG 2 cut(s) 275, 287
BseLI CCNNNNNNNGG 2 cut(s) 266, 270
BsgI GTGCAG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 266, 270
BsmAI GTCTC 2 cut(s) 100, 155
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 58, 265
BssMI GATC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 275, 287
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 100, 155
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 275, 287
BtsIMutI CAGTG 1 cut(s) 138
Csp6I GTAC 1 cut(s) 76
CviAII CATG 2 cut(s) 115, 151
CviJI RGCY 3 cut(s) 86, 201, 244
CviKI_1 RGCY 3 cut(s) 86, 201, 244
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 118, 154
FaiI YATR 6 cut(s) 72, 99, 116, 130, 152, 156
FatI CATG 2 cut(s) 114, 150
FblI GTMKAC 1 cut(s) 119
FokI GGATG 2 cut(s) 274, 282
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 1 cut(s) 165
Hin1II CATG 2 cut(s) 118, 154
HphI GGTGA 2 cut(s) 31, 163
Hpy166II GTNNAC 3 cut(s) 62, 76, 120
Hpy188I TCNGA 4 cut(s) 198, 225, 261, 302
Hpy8I GTNNAC 3 cut(s) 62, 76, 120
HpyCH4IV ACGT 2 cut(s) 64, 207
HpyCH4V TGCA 2 cut(s) 81, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 64, 207
Hsp92II CATG 2 cut(s) 118, 154
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 95, 164, 200, 244, 305
LweI GCATC 3 cut(s) 133, 227, 296
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 64, 207
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 2 cut(s) 34, 37
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 2 cut(s) 48, 310
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 2 cut(s) 265, 267
MseI TTAA 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 118, 154
NspI RCATGY 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 203
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 9, 67, 203, 210, 283
SfaNI GCATC 3 cut(s) 133, 227, 296
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 2 cut(s) 48, 310
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 203
StyI CCWWGG 1 cut(s) 265
TaiI ACGT 2 cut(s) 67, 210
TasI AATT 2 cut(s) 48, 310
TatI WGTACW 1 cut(s) 75
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 145
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.