Rh2DG037300

Belongs to the bacterial ribosomal protein bL36 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010220
Physical Location & Seq
Reverse (-)
2566898 .. 2582068
15171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG037300.1

Sequence Viewer

Length: 654 bp
ATGCCTCGCTTTCTCTCCCTACTCTCTCTCCCCCACCATTCCCAGATCAAACTACGTCGTTCAGTCCGCGTTGCCTTAGCTCCGTCCAAGCAGATCAATCTTCGCTTCTGCAGTCTCCGGCGAGAGGCCTTCAAGTTCTCCTCGCTCAGCCAGTCCGACTCGCACCGCGTCCGGCTCTCGACGGCTTCGCGGTCCAAGAAGGTTTCGGCGGCCTTGTCAGGTCTGCTACAACAGACAGACCAACGCATCTACTCCCCTCGCAGTGAAGAAGAAGAAGAAGAAGAACATAGAGGAGTCATTTCTTACACAGCAAAACGCCGCCGTTTTCAATCAGTAGCCATGAAGGTGCGATCATCGGTGAAGAAGATGTGCGAGTTTTGTAAGACAATTAAACGCCGTGGACGTGTTTATGTGTACTGCACAGCCAATCCTAAGCATAAGCAGAGACAGGGCATGTCTACATTTGCATATCAAGGCACTGATGCTCCCATGTCTGCAGAGACTAGTATCACCAAGCAGGAGAACAACTTTGGTCAGAGCTCTCACGTAGGTCTGGCATCTCTGATTCCCAGAAAGAATGAGCCGTCAATGCCCTCTCCGACCCTTGGATGGAGGGTAGGCTTGGCATCCCTGCTGTTCAGAAAGGCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

217

Amino Acids

24.68

Weight (kDa)

10.86

Isoelectric Point (pI)

81.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 114 - 151 9e-21 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 458
AccII CGCG 3 cut(s) 69, 168, 190
AciI CCGC 5 cut(s) 67, 166, 190, 209, 319
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 124, 605, 609
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 133, 329
AhlI ACTAGT 1 cut(s) 503
AjiI CACGTC 1 cut(s) 404
AluBI AGCT 2 cut(s) 80, 540
AluI AGCT 2 cut(s) 80, 540
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 3 cut(s) 119, 439, 494
AoxI GGCC 3 cut(s) 126, 210, 645
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 370, 502
AvaII GGWCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 542
BccI CCATC 1 cut(s) 603
BceAI ACGGC 4 cut(s) 198, 306, 381, 568
BcoDI GTCTC 3 cut(s) 119, 439, 494
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 2 cut(s) 109, 495
BisI GCNGC 2 cut(s) 210, 319
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 2 cut(s) 211, 320
Bme18I GGWCC 1 cut(s) 192
BmgBI CACGTC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 192
BmsI GCATC 4 cut(s) 255, 472, 566, 635
Bpu10I CCTNAGC 2 cut(s) 76, 432
Bpu1102I GCTNAGC 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 397, 604
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 469, 499
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 605, 609
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 397, 604
BseGI GGATG 2 cut(s) 614, 626
BseLI CCNNNNNNNGG 3 cut(s) 124, 605, 609
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 130, 306
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 3 cut(s) 69, 168, 190
BshFI GGCC 3 cut(s) 128, 212, 647
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 2 cut(s) 118, 172
BslI CCNNNNNNNGG 3 cut(s) 124, 605, 609
BsmAI GTCTC 3 cut(s) 119, 439, 494
BsnI GGCC 3 cut(s) 128, 212, 647
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 3 cut(s) 45, 93, 350
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 5 cut(s) 67, 166, 190, 209, 319
BspANI GGCC 3 cut(s) 128, 212, 647
BspCNI CTCAG 1 cut(s) 159
BspFNI CGCG 3 cut(s) 69, 168, 190
BspMAI CTGCAG 2 cut(s) 113, 499
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 397, 604
BssMI GATC 3 cut(s) 45, 93, 350
BssT1I CCWWGG 1 cut(s) 604
BstBAI YACGTR 1 cut(s) 547
BstDEI CTNAG 3 cut(s) 76, 146, 432
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 614, 626
BstFNI CGCG 3 cut(s) 69, 168, 190
BstKTI GATC 3 cut(s) 48, 96, 353
BstMAI GTCTC 3 cut(s) 119, 439, 494
BstMBI GATC 3 cut(s) 45, 93, 350
BstMWI GCNNNNNNNGC 1 cut(s) 589
BstNSI RCATGY 1 cut(s) 457
BstSFI CTRYAG 2 cut(s) 109, 495
BstUI CGCG 3 cut(s) 69, 168, 190
BsuRI GGCC 3 cut(s) 128, 212, 647
BtgI CCRYGG 1 cut(s) 397
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 2 cut(s) 614, 626
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 477
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 415
CviAII CATG 3 cut(s) 340, 454, 490
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 3 cut(s) 76, 146, 432
DpnI GATC 3 cut(s) 47, 95, 352
DpnII GATC 3 cut(s) 45, 93, 350
Ecl136II GAGCTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 604
Eco147I AGGCCT 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 3 cut(s) 343, 457, 493
FaiI YATR 7 cut(s) 288, 341, 411, 438, 455, 469, 491
FatI CATG 3 cut(s) 339, 453, 489
FblI GTMKAC 1 cut(s) 458
Fnu4HI GCNGC 2 cut(s) 210, 319
FokI GGATG 2 cut(s) 613, 621
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 210, 319
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 210, 319
HaeIII GGCC 3 cut(s) 128, 212, 647
HapII CCGG 2 cut(s) 118, 172
HgaI GACGC 1 cut(s) 157
Hin1II CATG 3 cut(s) 343, 457, 493
HinfI GANTC 3 cut(s) 158, 294, 565
HpaII CCGG 2 cut(s) 118, 172
HphI GGTGA 2 cut(s) 370, 502
Hpy166II GTNNAC 3 cut(s) 401, 415, 459
Hpy188I TCNGA 5 cut(s) 157, 537, 564, 600, 641
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 3 cut(s) 401, 415, 459
Hpy99I CGWCG 2 cut(s) 60, 184
HpyAV CCTTC 3 cut(s) 139, 193, 337
HpyCH4IV ACGT 3 cut(s) 55, 403, 546
HpyCH4V TGCA 4 cut(s) 111, 420, 467, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 589
HpyF3I CTNAG 3 cut(s) 76, 146, 432
HpySE526I ACGT 3 cut(s) 55, 403, 546
Hsp92II CATG 3 cut(s) 343, 457, 493
Kzo9I GATC 3 cut(s) 45, 93, 350
LmnI GCTCC 2 cut(s) 85, 490
LweI GCATC 4 cut(s) 255, 472, 566, 635
MaeI CTAG 1 cut(s) 504
MaeII ACGT 3 cut(s) 55, 403, 546
MalI GATC 3 cut(s) 47, 95, 352
MboI GATC 3 cut(s) 45, 93, 350
MboII GAAGA 9 cut(s) 92, 278, 281, 284, 287, 290, 293, 373, 376
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 2 cut(s) 387, 649
MlyI GAGTC 2 cut(s) 152, 303
MmeI TCCRAC 2 cut(s) 180, 623
MnlI CCTC 7 cut(s) 15, 118, 151, 267, 284, 604, 606
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 2 cut(s) 118, 172
MvnI CGCG 3 cut(s) 69, 168, 190
MwoI GCNNNNNNNGC 1 cut(s) 589
NdeII GATC 3 cut(s) 45, 93, 350
NlaIII CATG 3 cut(s) 343, 457, 493
NspI RCATGY 1 cut(s) 457
PceI AGGCCT 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PfeI GAWTC 1 cut(s) 565
PkrI GCNGC 2 cut(s) 211, 320
PleI GAGTC 2 cut(s) 152, 302
PpsI GAGTC 2 cut(s) 152, 302
Ppu21I YACGTR 1 cut(s) 547
Psp124BI GAGCTC 1 cut(s) 542
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 2 cut(s) 113, 499
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 210, 319
Sau3AI GATC 3 cut(s) 45, 93, 350
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 2 cut(s) 152, 303
SduI GDGCHC 1 cut(s) 542
SetI ASST 9 cut(s) 58, 82, 204, 223, 348, 406, 542, 549, 553
SfaNI GCATC 4 cut(s) 255, 472, 566, 635
SfcI CTRYAG 2 cut(s) 109, 495
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 2 cut(s) 387, 649
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 5 cut(s) 67, 166, 190, 209, 319
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 542
StuI AGGCCT 1 cut(s) 128
StyI CCWWGG 1 cut(s) 604
TaiI ACGT 3 cut(s) 58, 406, 549
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 387, 649
TatI WGTACW 1 cut(s) 414
TauI GCSGC 2 cut(s) 212, 321
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 268, 484
TspDTI ATGAA 1 cut(s) 356
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 268, 484
VpaK11BI GGWCC 1 cut(s) 192
XceI RCATGY 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 458
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.