FvH4_1g03150

Belongs to the bacterial ribosomal protein bL36 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010220
Physical Location & Seq
Reverse (-)
1772962 .. 1775272
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03150.t1

Sequence Viewer

Length: 315 bp
ATGAAGGTGCGATCATCGGTGAAGAAGATGTGTGAGTTTTGCAAAACAATTAAGCGCCGTGGACGTGTGTATGTGTATTGCACAGCCAATCCCAAGCATAAGCAGAGACAGGGCTTTTCCACATTTGCTTATCAAGGCAGTGATGCTCCCATATCCACACCAACTATTGTCACCAAGCAGGAGATCAACTTTGGTCAGAGCTCTCACGTAGGTCTGGCATCTCTGATTCCCAGAAAGAACGAGCTGTCATTGCCCTCCCCAACCCTCGGATGGAGGGTCGGCTTGGCATCATTGCTATTCAAAAAGATCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

105

Amino Acids

11.65

Weight (kDa)

10.39

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 1 - 38 2.3e-21 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 266, 270
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 301
AjiI CACGTC 1 cut(s) 65
AluBI AGCT 2 cut(s) 201, 244
AluI AGCT 2 cut(s) 201, 244
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 31, 163
BanII GRGCYC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BccI CCATC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 65
BmsI GCATC 3 cut(s) 133, 227, 296
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 58, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 270
Bse3DI GCAATG 2 cut(s) 248, 290
BseDI CCNNGG 2 cut(s) 58, 265
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 266, 270
BseMI GCAATG 2 cut(s) 248, 290
BsiHKAI GWGCWC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 266, 270
BsmAI GTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 11, 183, 306
BsrDI GCAATG 2 cut(s) 248, 290
BssECI CCNNGG 2 cut(s) 58, 265
BssMI GATC 3 cut(s) 11, 183, 306
BstBAI YACGTR 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 14, 186, 309
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 11, 183, 306
BstMWI GCNNNNNNNGC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 57
CviJI RGCY 5 cut(s) 86, 114, 201, 244, 282
CviKI_1 RGCY 5 cut(s) 86, 114, 201, 244, 282
DdeI CTNAG 1 cut(s) 312
DpnI GATC 3 cut(s) 13, 185, 308
DpnII GATC 3 cut(s) 11, 183, 306
Ecl136II GAGCTC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 203
FaiI YATR 3 cut(s) 72, 99, 152
FokI GGATG 1 cut(s) 282
FriOI GRGCYC 1 cut(s) 203
GlaI GCGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 226
HphI GGTGA 2 cut(s) 31, 163
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 198, 225, 269
Hpy8I GTNNAC 1 cut(s) 62
HpyCH4IV ACGT 2 cut(s) 64, 207
HpyCH4V TGCA 2 cut(s) 42, 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 2 cut(s) 64, 207
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 11, 183, 306
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 95, 164, 200, 244
LweI GCATC 3 cut(s) 133, 227, 296
MaeII ACGT 2 cut(s) 64, 207
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 13, 185, 308
MboI GATC 3 cut(s) 11, 183, 306
MboII GAAGA 2 cut(s) 34, 37
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 48
MnlI CCTC 3 cut(s) 265, 267, 275
MseI TTAA 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 250
NdeII GATC 3 cut(s) 11, 183, 306
NmuCI GTSAC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 203
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 51
Sau3AI GATC 3 cut(s) 11, 183, 306
SduI GDGCHC 1 cut(s) 203
SetI ASST 6 cut(s) 9, 67, 203, 210, 214, 246
SfaNI GCATC 3 cut(s) 133, 227, 296
Sse9I AATT 1 cut(s) 48
SstI GAGCTC 1 cut(s) 203
TaiI ACGT 2 cut(s) 67, 210
TasI AATT 1 cut(s) 48
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.