Rh2AG037600

Belongs to the bacterial ribosomal protein bL36 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010220
Physical Location & Seq
Reverse (-)
2913042 .. 2915131
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG037600.1

Sequence Viewer

Length: 351 bp
ATGCTGAATTCGATGGCTTCTTTGATTTTTACTACAGTAGCCATGAAGGTGCGATCATCGGTGAAAAAGATGTGCGAGTTTTGTAAGACAATTAAACGCCGTGGACGTGTTTATGTGTACTGCACAGCCAATCCTAAGCATAAGCAGAGACAGGGCATGTCTACATTTGCATATCAAGGCACTGATGCTCCCATGTCTGCAGAGACTAGTATCACCAAGCAGGAGAACAACTTTGGTCAGAGCTCTCACGTAGGTCTGGCATCTCTGATTCCCAGAAAGAATGAGCCGTCAATGCCCTCCCTTGGATGGAGGGTAGGCTTGGCATCCCTGCTGTTCAGAAAGGCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

116

Amino Acids

12.94

Weight (kDa)

10.35

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 15 - 52 2.9e-21 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 302, 306
AflIII ACRYGT 1 cut(s) 106
AhlI ACTAGT 1 cut(s) 206
AjiI CACGTC 1 cut(s) 107
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 142, 197
AoxI GGCC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 73, 205
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 2 cut(s) 7, 300
BceAI ACGGC 2 cut(s) 84, 271
BcoDI GTCTC 2 cut(s) 142, 197
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 2 cut(s) 33, 198
BmgBI CACGTC 1 cut(s) 107
BmsI GCATC 3 cut(s) 175, 269, 332
Bpu10I CCTNAGC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 100, 301
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 306
BseDI CCNNGG 2 cut(s) 100, 301
BseGI GGATG 2 cut(s) 311, 323
BseLI CCNNNNNNNGG 2 cut(s) 302, 306
BsgI GTGCAG 1 cut(s) 106
BshFI GGCC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 302, 306
BsmAI GTCTC 2 cut(s) 142, 197
BsnI GGCC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 1 cut(s) 344
BspMAI CTGCAG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 100, 301
BssMI GATC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 2 cut(s) 311, 323
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 142, 197
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 160
BstSFI CTRYAG 2 cut(s) 33, 198
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 100
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 311, 323
BtsIMutI CAGTG 1 cut(s) 180
Csp6I GTAC 1 cut(s) 118
CviAII CATG 3 cut(s) 43, 157, 193
CviJI RGCY 7 cut(s) 17, 41, 128, 243, 286, 318, 344
CviKI_1 RGCY 7 cut(s) 17, 41, 128, 243, 286, 318, 344
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 3 cut(s) 46, 160, 196
FaiI YATR 6 cut(s) 44, 114, 141, 158, 172, 194
FatI CATG 3 cut(s) 42, 156, 192
FblI GTMKAC 1 cut(s) 161
FokI GGATG 2 cut(s) 310, 318
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 1 cut(s) 207
HaeIII GGCC 1 cut(s) 344
Hin1II CATG 3 cut(s) 46, 160, 196
HinfI GANTC 1 cut(s) 268
HphI GGTGA 2 cut(s) 73, 205
Hpy166II GTNNAC 3 cut(s) 104, 118, 162
Hpy188I TCNGA 3 cut(s) 240, 267, 338
Hpy8I GTNNAC 3 cut(s) 104, 118, 162
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 106, 249
HpyCH4V TGCA 3 cut(s) 123, 170, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 2 cut(s) 106, 249
Hsp92II CATG 3 cut(s) 46, 160, 196
Kzo9I GATC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 137, 206, 242, 286, 341
LweI GCATC 3 cut(s) 175, 269, 332
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 106, 249
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 3 cut(s) 7, 90, 346
MnlI CCTC 2 cut(s) 303, 307
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 1 cut(s) 53
NlaIII CATG 3 cut(s) 46, 160, 196
NspI RCATGY 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PfeI GAWTC 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 245
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 245
SetI ASST 5 cut(s) 51, 109, 245, 252, 256
SfaNI GCATC 3 cut(s) 175, 269, 332
SfcI CTRYAG 2 cut(s) 33, 198
SmiMI CAYNNNNRTG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 3 cut(s) 7, 90, 346
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 245
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 109, 252
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 7, 90, 346
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 187
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.