MD02G1030500.v1.1

Ribosomal protein L36

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010220
Physical Location & Seq
Reverse (-)
2382533 .. 2384263
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1030500.v1.1.491

Sequence Viewer

Length: 312 bp
ATGAAGGTGCGTTCATCTGTGAAGAAGATGTGTGAGTTTTGTAAGACAGTTAAGCGTCGCGGGCGTGTTTTCGTGATTTGCACAGCCAACCCCAAGCATAAGCAAAGACAGGGCATGTCGACATTGGCGTATGAAGGCACAGTGTCCTCCATATGTGCAGAGACTAGTGCCAAGCTGGAGAACAACTCCGGTCACAGATTGCATGCAGGTTTGGCCTCTCTGATACCCCAAAAGCCAGAACCCTCTATACCCTCTACGATTCTCGGATGGAGGATGCGCCTGGCATCCATGCTGTCCAGAAACGCCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

104

Amino Acids

11.42

Weight (kDa)

10.55

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L36 PF00444 1 - 38 1.8e-21 Ribosomal protein L36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 119
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AhlI ACTAGT 1 cut(s) 164
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 279
BccI CCATC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 155
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 2 cut(s) 264, 293
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 188
BseBI CCWGG 1 cut(s) 281
BseGI GGATG 3 cut(s) 272, 279, 284
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 215
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 215
BspFNI CGCG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 49, 142
BstC8I GCNNGC 2 cut(s) 62, 204
BstF5I GGATG 3 cut(s) 272, 279, 284
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 61, 212
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 2 cut(s) 118, 206
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 3 cut(s) 272, 279, 284
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 62, 204
CfoI GCGC 1 cut(s) 279
CseI GACGC 1 cut(s) 44
CviAII CATG 3 cut(s) 115, 203, 289
CviJI RGCY 4 cut(s) 86, 175, 215, 235
CviKI_1 RGCY 4 cut(s) 86, 175, 215, 235
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 118, 206, 292
FaiI YATR 8 cut(s) 99, 116, 132, 152, 154, 204, 248, 290
FatI CATG 3 cut(s) 114, 202, 288
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 152
FblI GTMKAC 1 cut(s) 119
FokI GGATG 3 cut(s) 271, 279, 286
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 118, 206, 292
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 222, 266
Hpy188III TCNNGA 2 cut(s) 73, 297
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 49, 142
HpyCH4V TGCA 4 cut(s) 81, 158, 202, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 212
Hsp92II CATG 3 cut(s) 118, 206, 292
HspAI GCGC 1 cut(s) 277
LpnPI CCDG 7 cut(s) 95, 161, 192, 202, 249, 266, 293
LweI GCATC 2 cut(s) 264, 293
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 2 cut(s) 34, 37
MluCI AATT 1 cut(s) 307
MnlI CCTC 5 cut(s) 157, 226, 253, 262, 264
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 61, 212
NdeI CATATG 1 cut(s) 152
NlaIII CATG 3 cut(s) 118, 206, 292
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 2 cut(s) 118, 206
PaeI GCATGC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PfeI GAWTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PsrI GAACNNNNNNTAC 2 cut(s) 231, 263
SalI GTCGAC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 281
SetI ASST 3 cut(s) 9, 177, 211
SfaNI GCATC 2 cut(s) 264, 293
SpeI ACTAGT 1 cut(s) 164
SphI GCATGC 1 cut(s) 206
Sse9I AATT 1 cut(s) 307
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 49, 142
TaqI TCGA 1 cut(s) 119
TasI AATT 1 cut(s) 307
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 17, 147
TspRI CASTG 1 cut(s) 147
XceI RCATGY 2 cut(s) 118, 206
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.