pycom15g15350

Ribosomal protein L36

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010220
Physical Location & Seq
Reverse (-)
10688433 .. 10690103
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15350.2

Sequence Viewer

Length: 459 bp
ATGGAAGTTTTACACTCTAGCACACAGACAAGACACAGAAGGAAGAATACGAAGAAGAATCAATCACTGACACTGCAGAATAAGAGAGGCGGTGCAATTTTTTTAGCAGCCAAACGCCGCCGTCAGCCACCAGTAGCCATGAAGGTGCGTTCATCTGTGAAGAAGATGTGTGAGTTTTGTAAGACTGTGAAGCGTCGTGGGCGTGTTTTTGTGATTTGCACAGCCAATCCCAAGCATAAGCAAAGACAGGGCATGTCGACATTGGCGTATGAAGGCACGGTGTCCTCCGTGTTTGCGGAGACTAGTTCCAAGCTGGAGAACAACTCTGGTCGCACCTTGCAGGCAGGTTTGGCCTCTCTGATACCCAAAAAGCCAGAACCCTCTATGCCCTCTATGCCCACTACGATTCTCGGATGGAGGGTGCGCCTGGCATCCATGCTGTCCAGAAACACCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L36

Protein Analysis

153

Amino Acids

17.05

Weight (kDa)

11.7

Isoelectric Point (pI)

73.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 257
AciI CCGC 3 cut(s) 90, 118, 296
AhlI ACTAGT 1 cut(s) 302
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 31, 63
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 408
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 18, 303
BfmI CTRYAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 335
BisI GCNGC 2 cut(s) 108, 118
BlsI GCNGC 2 cut(s) 109, 119
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 428
BseGI GGATG 2 cut(s) 419, 431
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 119
BshFI GGCC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 353
BspACI CCGC 3 cut(s) 90, 118, 296
BspANI GGCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 187, 280
BstC8I GCNNGC 1 cut(s) 342
BstF5I GGATG 2 cut(s) 419, 431
BstHHI GCGC 1 cut(s) 426
BstMAI GTCTC 1 cut(s) 293
BstMWI GCNNNNNNNGC 3 cut(s) 199, 350, 394
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 2 cut(s) 419, 431
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 65, 71
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 426
CseI GACGC 1 cut(s) 182
CviAII CATG 3 cut(s) 139, 253, 436
CviJI RGCY 7 cut(s) 110, 127, 137, 224, 313, 353, 373
CviKI_1 RGCY 7 cut(s) 110, 127, 137, 224, 313, 353, 373
EcoRII CCWGG 1 cut(s) 426
FaeI CATG 3 cut(s) 142, 256, 439
FaiI YATR 7 cut(s) 140, 237, 254, 270, 386, 395, 437
FatI CATG 3 cut(s) 138, 252, 435
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 108, 118
FokI GGATG 2 cut(s) 418, 426
Fsp4HI GCNGC 2 cut(s) 108, 118
FspBI CTAG 2 cut(s) 18, 303
GlaI GCGC 1 cut(s) 425
GluI GCNGC 2 cut(s) 108, 118
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 353
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 426
Hin1II CATG 3 cut(s) 142, 256, 439
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 2 cut(s) 58, 406
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 360, 413
Hpy188III TCNNGA 1 cut(s) 444
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 3 cut(s) 33, 136, 266
HpyCH4III ACNGT 2 cut(s) 187, 280
HpyCH4V TGCA 4 cut(s) 76, 95, 219, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 350, 394
Hsp92II CATG 3 cut(s) 142, 256, 439
HspAI GCGC 1 cut(s) 424
LpnPI CCDG 9 cut(s) 144, 233, 299, 312, 326, 330, 387, 413, 440
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 440
MaeI CTAG 2 cut(s) 18, 303
MboII GAAGA 5 cut(s) 55, 64, 67, 172, 175
MluCI AATT 2 cut(s) 96, 454
MnlI CCTC 6 cut(s) 80, 295, 364, 391, 400, 411
MslI CAYNNNNRTG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 3 cut(s) 199, 350, 394
NlaIII CATG 3 cut(s) 142, 256, 439
NspI RCATGY 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PfeI GAWTC 2 cut(s) 58, 406
PkrI GCNGC 2 cut(s) 109, 119
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PstI CTGCAG 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 143
SalI GTCGAC 1 cut(s) 256
SatI GCNGC 2 cut(s) 108, 118
ScrFI CCNGG 1 cut(s) 428
SetI ASST 4 cut(s) 147, 315, 338, 349
SfaNI GCATC 1 cut(s) 440
SfcI CTRYAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 2 cut(s) 96, 454
SsiI CCGC 3 cut(s) 90, 118, 296
SspMI CTAG 2 cut(s) 18, 303
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 187, 280
TaqI TCGA 1 cut(s) 257
TasI AATT 2 cut(s) 96, 454
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 58, 406
TscAI CASTG 2 cut(s) 72, 78
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 141, 155, 285
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 2 cut(s) 72, 78
XceI RCATGY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 18, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.