Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Reverse (-)

6956573 .. 6958338

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGACTCTAGACTCCGACGTTACCATGATTCCTGCCGGAGAAGCCTCCAGCAGCGTAGCCGCGTCGTCTTCCAACAAGAAAGCTAAGCGATTCGAAATTAAGAAGTGGAGCGCCGTTGCTCTCTGGGCTTGGGATATCGTTGTTGACAACTGTGCGATCTGCAGAAACCACATCATGGATCTTTGTATCGAGTGTCAGGCTAATCAGGCCAGTGCCACAAGTGAAGAGTGCACTGTAGCTTGGGGGGTTTGCAATCACGCCTTCCACTTTCACTGCATCAGCAGATGGCTAAAGACTCGTCAAGTTTGTCCATTGGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

6.17

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	50 - 83	9.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	94 - 130	5.5e-07	Ring finger domain
zf-rbx1	PF12678	96 - 132	1.6e-12	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	105 - 138	4.4e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	1 cut(s)	65
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	178
AluBI	AGCT	2 cut(s)	86, 242
AluI	AGCT	2 cut(s)	86, 242
Alw21I	GWGCWC	1 cut(s)	236
Alw44I	GTGCAC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	210
ApaLI	GTGCAC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	2 cut(s)	163, 237
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	2 cut(s)	55, 63
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	2 cut(s)	56, 64
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	178
BsnI	GGCC	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	159, 181
Bsp1720I	GCTNAGC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	167
BspPI	GGATC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	159, 181
Bst4CI	ACNGT	3 cut(s)	155, 238, 326
Bst6I	CTCTTC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	65
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	162, 184
BstMBI	GATC	2 cut(s)	159, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 128, 209
BstSFI	CTRYAG	2 cut(s)	163, 237
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	4 cut(s)	220, 234, 274, 331
CfoI	GCGC	1 cut(s)	116
CseI	GACGC	1 cut(s)	54
CviAII	CATG	2 cut(s)	28, 178
CviJI	RGCY	8 cut(s)	47, 62, 86, 131, 203, 212, 242, 292
CviKI_1	RGCY	8 cut(s)	47, 62, 86, 131, 203, 212, 242, 292
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	161, 183
DpnII	GATC	2 cut(s)	159, 181
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	139
FaeI	CATG	2 cut(s)	31, 181
FaiI	YATR	3 cut(s)	29, 179, 348
FatI	CATG	2 cut(s)	27, 177
Fnu4HI	GCNGC	2 cut(s)	55, 63
Fsp4HI	GCNGC	2 cut(s)	55, 63
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	55, 63
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	31, 181
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	5 cut(s)	7, 14, 31, 93, 298
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	148, 234
Hpy188I	TCNGA	2 cut(s)	19, 342
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	148, 234
Hpy99I	CGWCG	2 cut(s)	23, 70
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	155, 238, 326
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	165, 234, 255, 279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 128, 209
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	31, 181
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	159, 181
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	48, 52, 64, 112, 185, 194, 226
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	22, 350
MalI	GATC	2 cut(s)	161, 183
MboI	GATC	2 cut(s)	159, 181
MboII	GAAGA	2 cut(s)	63, 239
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	8, 292
MmeI	TCCRAC	2 cut(s)	42, 99
MnlI	CCTC	1 cut(s)	58
MseI	TTAA	1 cut(s)	102
MspI	CCGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	44, 128, 209
NdeII	GATC	2 cut(s)	159, 181
NlaIII	CATG	2 cut(s)	31, 181
NmuCI	GTSAC	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	31, 93
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	56, 64
PleI	GAGTC	2 cut(s)	8, 292
PpsI	GAGTC	2 cut(s)	8, 292
PstI	CTGCAG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	55, 63
Sau3AI	GATC	2 cut(s)	159, 181
SchI	GAGTC	2 cut(s)	8, 292
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	3 cut(s)	24, 88, 244
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	2 cut(s)	163, 237
SfuI	TTCGAA	1 cut(s)	96
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	155, 238, 326
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	96, 192
TasI	AATT	1 cut(s)	99
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	31, 93
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	4 cut(s)	220, 241, 281, 331
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	350
TspRI	CASTG	4 cut(s)	220, 241, 281, 331
Van91I	CCANNNNNTGG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	232
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.