Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Forward (+)

31831750 .. 31833990

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0221800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCATTTATGCCATCAAGCAACGAAATGTGCTGGTATGAGGTTACTGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGATGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCCGGAACAAATGACGCATTTGCTGCAGTCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCGAAAATATGAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031463 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

110

Amino Acids

12.68

Weight (kDa)

6.57

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	75, 238
AluI	AGCT	2 cut(s)	75, 238
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	1 cut(s)	21
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	2 cut(s)	209, 233
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	188, 300
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	188, 300
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	95, 123, 235
BmuI	ACTGGG	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	112, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	112, 299
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	112
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	112, 299
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	186, 298
BstSFI	CTRYAG	2 cut(s)	209, 233
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	113, 249
CviJI	RGCY	7 cut(s)	75, 124, 155, 238, 254, 283, 298
CviKI_1	RGCY	7 cut(s)	75, 124, 155, 238, 254, 283, 298
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	2 cut(s)	6, 228
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	2 cut(s)	116, 252
FaiI	YATR	9 cut(s)	10, 38, 114, 131, 162, 170, 242, 250, 293
FatI	CATG	2 cut(s)	112, 248
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	116, 252
HpaII	CCGG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	5 cut(s)	4, 86, 211, 226, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	116, 252
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	6 cut(s)	18, 81, 128, 201, 285, 312
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	3 cut(s)	95, 123, 235
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	155
MnlI	CCTC	2 cut(s)	33, 321
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	2 cut(s)	6, 228
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	188, 300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	112
NlaIII	CATG	2 cut(s)	116, 252
NlaIV	GGNNCC	1 cut(s)	282
NsiI	ATGCAT	2 cut(s)	6, 228
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	188, 300
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	44, 77, 147, 240, 332
SfaNI	GCATC	3 cut(s)	95, 123, 235
SfcI	CTRYAG	2 cut(s)	209, 233
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	1 cut(s)	317
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	186, 298
StyI	CCWWGG	1 cut(s)	112
TasI	AATT	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	169, 308
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	317
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	2 cut(s)	6, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.