Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Forward (+)

45049433 .. 45051516

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGACATTGGACTCCGACGTGCCGATGATCCCGGTAGGTGAGGGCTCCAGCTCTGCAGGTCCTTCCTCGACCAAGAGGCCCAAGCGATTTGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCCTGGGATATTGTTGTGGATAATTGCGCCATTTGCAGGAACCATATTATGGACCTCTGCATCGAGTGCCAAGCGAACCAGGCAAGTGCTACAAGTGAGGAGTGTACCGTTGCTTGGGGGGTTTGTAACCATGCCTTCCACTTCCACTGCATAAGCAGATGGCTCAAGACTCGTCAAGTGTGTCCCTTGGATAACAGCGAGTGGGAGTTCCAGAAGTATGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

117

Amino Acids

13.21

Weight (kDa)

6.17

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	49 - 107	1.9e-25	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	49 - 113	1e-12	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	175
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	3 cut(s)	162, 175, 240
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	128, 204
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	80, 126
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	4 cut(s)	62, 81, 126, 178
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	62, 178
BanII	GRGCYC	1 cut(s)	50
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	130, 206
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	35, 130, 206
Bme18I	GGWCC	2 cut(s)	62, 178
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	62, 81, 126, 178
BmiI	GGNNCC	2 cut(s)	49, 167
BmrFI	CCNGG	3 cut(s)	35, 130, 206
BmsI	GCATC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	129, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 175, 240
BseBI	CCWGG	2 cut(s)	130, 206
BseDI	CCNNGG	2 cut(s)	129, 312
BseLI	CCNNNNNNNGG	3 cut(s)	162, 175, 240
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	82, 128
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	162, 175, 240
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	82, 128
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	30, 96
BspANI	GGCC	2 cut(s)	82, 128
BspLI	GGNNCC	2 cut(s)	49, 167
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	129, 312
BssMI	GATC	2 cut(s)	30, 96
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	130, 206
Bst4CI	ACNGT	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	33, 99
BstMBI	GATC	2 cut(s)	30, 96
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 159, 192, 206
BstNI	CCWGG	2 cut(s)	130, 206
BstSCI	CCNGG	3 cut(s)	33, 128, 204
BstSFI	CTRYAG	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	82, 128
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	4 cut(s)	62, 81, 126, 178
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	48, 54, 82, 128, 289
CviKI_1	RGCY	5 cut(s)	48, 54, 82, 128, 289
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	32, 98
DpnII	GATC	2 cut(s)	30, 96
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	62, 178
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	128, 204
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	260
FaiI	YATR	5 cut(s)	171, 176, 258, 278, 345
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	352
GlaI	GCGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	82, 128
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	14, 295
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	3 cut(s)	100, 292, 337
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	2 cut(s)	23, 119
HpyAV	CCTTC	2 cut(s)	75, 271
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	59, 162, 186, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 159, 192, 206
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	30, 96
LmnI	GCTCC	1 cut(s)	53
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	352
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	251, 347
MalI	GATC	2 cut(s)	32, 98
MboI	GATC	2 cut(s)	30, 96
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	2 cut(s)	8, 289
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	37, 72, 79, 191, 217
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	3 cut(s)	35, 130, 206
MvaI	CCWGG	2 cut(s)	130, 206
MwoI	GCNNNNNNNGC	4 cut(s)	125, 159, 192, 206
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	30, 96
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	49, 167
NmuCI	GTSAC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	175
PleI	GAGTC	2 cut(s)	8, 289
PpsI	GAGTC	2 cut(s)	8, 289
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	128, 204
PspGI	CCWGG	2 cut(s)	128, 204
PspN4I	GGNNCC	2 cut(s)	49, 167
PspPI	GGNCC	4 cut(s)	62, 81, 126, 178
PspPPI	RGGWCCY	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	30, 96
Sau96I	GGNCC	4 cut(s)	62, 81, 126, 178
SchI	GAGTC	2 cut(s)	8, 289
ScrFI	CCNGG	3 cut(s)	35, 130, 206
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	24, 43, 56, 64, 183
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	62, 178
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	148
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	33, 128, 204
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	71, 189
TasI	AATT	1 cut(s)	148
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspRI	CASTG	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	62, 178
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.