Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Reverse (-)

18768863 .. 18771657

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1195900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATTCCGGCGGGCGAGGGTTCGAGCAGTGCAGGTCCTTCGTCGACCAAAAAGCCCAAGCGATTTGAGATTAAGAAGTGGAATGCTGTAGCTCTCTGGGCTTGGGATATTGTGGTTGATAACTGTGCCATTTGCAGGAACCATATCATGGATCTCTGCATTGAGTGCCAAGCAAACCAGGCAAGTGCCACAAGTGAGGAGTGCACGGTTGCTTGGGGGGTTTGTAACCATGCATTCCACTTCCACTGCATAAGCCGATGGCTCAAGACCCGACAAGTGTGCCCATTGGATAACAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031463 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

6.93

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	40 - 98	1.5e-25	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	40 - 104	8.1e-13	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	135, 148
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	2 cut(s)	206, 284
Bbv12I	GWGCWC	1 cut(s)	206
BccI	CCATC	1 cut(s)	252
BcgI	CGANNNNNNTGC	4 cut(s)	21, 55, 261, 295
BciT130I	CCWGG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 148
BseBI	CCWGG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	135, 148
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	2 cut(s)	206, 284
BsgI	GTGCAG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	135, 148
BsmI	GAATGC	2 cut(s)	88, 233
Bsp1286I	GDGCHC	2 cut(s)	206, 284
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	140
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	159
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	125, 208, 320
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 165, 179
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	2 cut(s)	206, 284
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtsI	GCAGTG	2 cut(s)	34, 244
BtsIMutI	CAGTG	2 cut(s)	34, 244
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	148, 230
CviJI	RGCY	5 cut(s)	55, 92, 101, 255, 262
CviKI_1	RGCY	5 cut(s)	55, 92, 101, 255, 262
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	2 cut(s)	151, 233
FaiI	YATR	4 cut(s)	144, 149, 231, 251
FatI	CATG	2 cut(s)	147, 229
FauI	CCCGC	1 cut(s)	4
FblI	GTMKAC	1 cut(s)	44
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	151, 233
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	45, 204
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	45, 204
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	3 cut(s)	125, 208, 320
HpyCH4V	TGCA	6 cut(s)	32, 135, 159, 204, 233, 249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 165, 179
Hsp92II	CATG	2 cut(s)	151, 233
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	18, 21, 82, 121, 164, 191
MaeIII	GTNAC	2 cut(s)	224, 320
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	206, 284
MnlI	CCTC	2 cut(s)	10, 190
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	1 cut(s)	72
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	179
Mva1269I	GAATGC	2 cut(s)	88, 233
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	98, 165, 179
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	151, 233
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	235
PctI	GAATGC	2 cut(s)	88, 233
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	35
PspPPI	RGGWCCY	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	206, 284
SetI	ASST	2 cut(s)	37, 94
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	125, 208, 320
TaqI	TCGA	2 cut(s)	23, 44
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	34, 251
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspRI	CASTG	2 cut(s)	34, 251
Van91I	CCANNNNNTGG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.