Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Forward (+)

44609742 .. 44611159

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGACATTGGATTCCGACGTGCCCATGGTTCCGGCAGGCGAGGGATCCAGCGCTGCTGGCCCTTCTTCGGTTAAGAAGTCCAAGCGTTTCGAGATCAAGAAGTGGAATGCTGTGGCTCTCTGGGCTTGGGATATTGTTGTGGATAACTGTGCCATATGCAGAAACCATATCATGGATCTTTGCATTGAGTGCCAAGCAAACCAGGCAAGCGCAACAAGCGAGGAGTGTACAGTTGCTTGGGGGGTTTGTAACCATGCATTTCACTTTCACTGCATAAGCAGATGGCTCAAGACCCGCCAAGTGTGTCCATTAGATAACAGCGAGTGGGAGTTTCAGAAGTATGGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031463 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

117

Amino Acids

13.11

Weight (kDa)

6.17

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	49 - 107	1.9e-25	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	49 - 113	1e-12	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	3 cut(s)	42, 55, 186
AfaI	GTAC	1 cut(s)	232
AfeI	AGCGCT	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	70, 175
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	204
AlwI	GGATC	3 cut(s)	42, 55, 186
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	56, 215
AspS9I	GGNCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	33, 49
BmrFI	CCNGG	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 175
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	70, 175
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	70, 175
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	230
Bsp143I	GATC	3 cut(s)	47, 96, 178
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	33, 49
BspPI	GGATC	3 cut(s)	42, 55, 186
BsrGI	TGTACA	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	3 cut(s)	47, 96, 178
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	152, 235
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	40, 61, 211
BstDSI	CCRYGG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	56, 215
BstKTI	GATC	3 cut(s)	50, 99, 181
BstMBI	GATC	3 cut(s)	47, 96, 178
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 125, 192, 206, 219
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	47, 178
BstYI	RGATCY	2 cut(s)	47, 178
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	40, 61, 211
CfoI	GCGC	2 cut(s)	56, 215
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	28, 175, 257
CviJI	RGCY	4 cut(s)	63, 119, 128, 289
CviKI_1	RGCY	4 cut(s)	63, 119, 128, 289
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	3 cut(s)	49, 98, 180
DpnII	GATC	3 cut(s)	47, 96, 178
Eco130I	CCWWGG	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	31, 178, 260
FaiI	YATR	8 cut(s)	29, 158, 160, 171, 176, 258, 278, 345
FatI	CATG	3 cut(s)	27, 174, 256
FauI	CCCGC	1 cut(s)	305
FauNDI	CATATG	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	2 cut(s)	55, 214
GluI	GCNGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	2 cut(s)	56, 215
Hin1II	CATG	3 cut(s)	31, 178, 260
Hin6I	GCGC	2 cut(s)	54, 213
HinP1I	GCGC	2 cut(s)	54, 213
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	19, 339
Hpy188III	TCNNGA	3 cut(s)	94, 100, 292
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	152, 235
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	162, 186, 260, 276
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 125, 192, 206, 219
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	31, 178, 260
HspAI	GCGC	2 cut(s)	54, 213
Kzo9I	GATC	3 cut(s)	47, 96, 178
LpnPI	CCDG	7 cut(s)	24, 45, 48, 64, 109, 191, 218
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	3 cut(s)	49, 98, 180
MboI	GATC	3 cut(s)	47, 96, 178
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	2 cut(s)	47, 178
MhlI	GDGCHC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	37, 217
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	60, 125, 192, 206, 219
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	3 cut(s)	47, 96, 178
NlaIII	CATG	3 cut(s)	31, 178, 260
NlaIV	GGNNCC	2 cut(s)	33, 49
NsiI	ATGCAT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	33, 49
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	47, 178
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	47, 96, 178
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SsiI	CCGC	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	152, 235
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	93
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	1 cut(s)	56
TspRI	CASTG	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.