Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Reverse (-)

18856017 .. 18863970

Gene Structure 7954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1196400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCACATTGGATTCTGATGTCCCGATGGTTCCGGTAGGTGAGGGTTCGAGCAGTGCAGGTTCTTCGACCAAGAAGCCCAAGCGGTTTGAGATCAAGAAGTGGAATGCTGTCGCTCTATGGGCCTGGGATATTGTTGTTGATAACTGTGCCATTTGCAGGAACCATATCATGGATCTCTGCATTGAGTGCCAAGCAAACCAGGCAAGCGCGACGAGTGAAGAATGTACAGTTGCTTGGGGGGTTTGCAACCATGCATTTCACTTCCACTGCATAAGCCGATGGCTCAAGACACGCCAAGTGTGTCCGTTAGATAATAGCGAGTGGGAATTTCAGAAATATGGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

6.17

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	48 - 106	1.8e-25	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	48 - 112	9.9e-13	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	212
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	159, 172
AjnI	CCWGG	2 cut(s)	125, 201
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	3, 123
ApoI	RAATTY	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	22, 276
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	2 cut(s)	127, 203
BfuAI	ACCTGC	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	127, 203
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	33, 164
BmrFI	CCNGG	2 cut(s)	127, 203
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 172
BseBI	CCWGG	2 cut(s)	127, 203
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	159, 172
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	5, 125
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	159, 172
BsmFI	GGGAC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 125
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	93, 175
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	2 cut(s)	5, 125
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	33, 164
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	93, 175
Bst2UI	CCWGG	2 cut(s)	127, 203
Bst4CI	ACNGT	2 cut(s)	149, 232
BstAPI	GCANNNNNTGC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	96, 178
BstMBI	GATC	2 cut(s)	93, 175
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 189, 203
BstNI	CCWGG	2 cut(s)	127, 203
BstSCI	CCNGG	2 cut(s)	125, 201
BstUI	CGCG	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	5, 125
BtsI	GCAGTG	2 cut(s)	61, 268
BtsIMutI	CAGTG	2 cut(s)	61, 268
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	172, 254
CviJI	RGCY	5 cut(s)	5, 79, 125, 279, 286
CviKI_1	RGCY	5 cut(s)	5, 79, 125, 279, 286
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	2 cut(s)	95, 177
DpnII	GATC	2 cut(s)	93, 175
EaeI	YGGCCR	1 cut(s)	3
EcoRII	CCWGG	2 cut(s)	125, 201
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	2 cut(s)	175, 257
FaiI	YATR	6 cut(s)	121, 168, 173, 255, 275, 342
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	171, 253
GlaI	GCGC	1 cut(s)	211
HaeIII	GGCC	2 cut(s)	5, 125
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	175, 257
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	19, 336
Hpy188III	TCNNGA	3 cut(s)	25, 97, 289
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	149, 232
HpyCH4V	TGCA	6 cut(s)	59, 159, 183, 249, 257, 273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 189, 203
Hsp92II	CATG	2 cut(s)	175, 257
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	93, 175
LpnPI	CCDG	7 cut(s)	45, 48, 112, 139, 145, 188, 215
MalI	GATC	2 cut(s)	95, 177
MboI	GATC	2 cut(s)	93, 175
MboII	GAAGA	2 cut(s)	57, 233
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	37
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	127, 203
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	127, 203
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	122, 189, 203
NdeII	GATC	2 cut(s)	93, 175
NlaIII	CATG	2 cut(s)	175, 257
NlaIV	GGNNCC	2 cut(s)	33, 164
NsiI	ATGCAT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	125, 201
PspGI	CCWGG	2 cut(s)	125, 201
PspN4I	GGNNCC	2 cut(s)	33, 164
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	93, 175
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	127, 203
SetI	ASST	2 cut(s)	43, 64
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	125, 201
TaaI	ACNGT	2 cut(s)	149, 232
TaqI	TCGA	2 cut(s)	50, 68
TasI	AATT	1 cut(s)	329
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	61, 275
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	61, 275
Van91I	CCANNNNNTGG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.