Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Forward (+)

20723718 .. 20726293

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCACATTGGACTCTGACGTGCCGATGGTTCCGGTGGGCGAGGCTTCGAGCAGTGCTGGTCCTTCTTCGACCAAGAGGCCCAAGCGGTTCGAGATCAAGAAGTGGAATGCTGTTGCTCTCTGGGCTTGGGATATTGTGGTTGATAACTGTGCCATTTGCAGGAACCATATCATGGATCTCTGCATCGAGTGCCAAGCGAACCAGGCAAGTGCCACAAGTGAGGAGTGTACGGTTGCTTGGGGGGTCTGTAACCATGCATTCCACTTCCATTGCATAAGCCGATGGCTGAAAACGCGCCAAGTGTGTCCGTTGGATAACAGTGAGTGGGAGTTTCAGAAGTACGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

118

Amino Acids

13.21

Weight (kDa)

6.17

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccII	CGCG	1 cut(s)	298
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	232, 344
AfiI	CCNNNNNNNGG	2 cut(s)	162, 175
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	204
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	3, 80
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	62, 81
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	2 cut(s)	22, 279
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	62, 81
BmiI	GGNNCC	2 cut(s)	33, 167
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 175
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	162, 175
BseMI	GCAATG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	5, 82
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	162, 175
BsmI	GAATGC	2 cut(s)	115, 260
BsnI	GGCC	2 cut(s)	5, 82
Bsp143I	GATC	2 cut(s)	96, 178
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	5, 82
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	33, 167
BspPI	GGATC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	271
BssMI	GATC	2 cut(s)	96, 178
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	152, 235, 323, 347
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	2 cut(s)	99, 181
BstMBI	GATC	2 cut(s)	96, 178
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 192, 206, 295
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	5, 82
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	61, 328
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	62, 81
Csp6I	GTAC	2 cut(s)	231, 343
CspCI	CAANNNNNGTGG	2 cut(s)	254, 289
CviAII	CATG	2 cut(s)	175, 257
CviJI	RGCY	6 cut(s)	5, 47, 82, 128, 282, 289
CviKI_1	RGCY	6 cut(s)	5, 47, 82, 128, 282, 289
CviQI	GTAC	2 cut(s)	231, 343
DpnI	GATC	2 cut(s)	98, 180
DpnII	GATC	2 cut(s)	96, 178
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	2 cut(s)	178, 260
FaiI	YATR	4 cut(s)	171, 176, 258, 278
FatI	CATG	2 cut(s)	174, 256
FspBI	CTAG	1 cut(s)	352
GlaI	GCGC	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	5, 82
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	178, 260
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	19, 339
Hpy188III	TCNNGA	2 cut(s)	94, 100
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	4 cut(s)	152, 235, 323, 347
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	162, 186, 260, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 192, 206, 295
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	178, 260
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	96, 178
LpnPI	CCDG	6 cut(s)	45, 48, 109, 148, 191, 218
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	352
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	251, 347
MalI	GATC	2 cut(s)	98, 180
MboI	GATC	2 cut(s)	96, 178
MboII	GAAGA	1 cut(s)	60
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	3 cut(s)	37, 72, 217
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	2 cut(s)	115, 260
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	4 cut(s)	125, 192, 206, 295
NdeII	GATC	2 cut(s)	96, 178
NlaIII	CATG	2 cut(s)	178, 260
NlaIV	GGNNCC	2 cut(s)	33, 167
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	262
PctI	GAATGC	2 cut(s)	115, 260
PflMI	CCANNNNNTGG	1 cut(s)	175
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	33, 167
PspPI	GGNCC	2 cut(s)	62, 81
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	232, 344
RsaNI	GTAC	2 cut(s)	231, 343
Sau3AI	GATC	2 cut(s)	96, 178
Sau96I	GGNCC	2 cut(s)	62, 81
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	62
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	152, 235, 323, 347
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	4 cut(s)	50, 71, 93, 189
TscAI	CASTG	2 cut(s)	61, 328
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	61, 328
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	62
XspI	CTAG	1 cut(s)	352
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.