Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006039

Physical Location & Seq

Genomic Coordinates Forward (+)

20696269 .. 20698937

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G152300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCGACATTGGATTCAGATGTGCCTATGGTTCCGGTAGGCGAGGCTTCAAGCAGTGCAGGTTCATCGACCAAGAAGCCCAAGCGATTTGAGATCAAGAAGTGGAATGCTGTCGCTCTCTGGGCCTGGGATATTGTTGTTGATAACTGTGCCATTTGCAGGAACCATATCATGGATCTCTGCATTGAGTGCCAAGCAAACCAGGCAAGCGCCACAAGCGAGGAGTGTACAGTTGCTTGGGGGGTTTGCAACCATGCATTCCACTTTCACTGCATAAGCCGATGGCTCAAGACCCGCCAAGTGTGTCCATTAGATAATAGCGAGTGGGAGTTTCAGAAGTATGGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031463 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

117

Amino Acids

13.09

Weight (kDa)

6.17

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20570 AT5G20570 AT5G20570
fragaria_vesca	FvH4_7g12780 FvH4_7g12820
malus_domestica	MD02G1195900.v1.1 MD02G1196400.v1.1 MD07G1125100.v1.1
prunus_persica	Prupe.2G152300_v2.0.a1 Prupe.2G152700_v2.0.a1
pyrus_communis	pycom07g11850
rosa_chinensis	RchiOBHm_Chr1g0351811 RchiOBHm_Chr1g0351851
rosa_laevigata	RLG00000028377 RLG00000028381
rosa_multiflora	Rmu_sc0003326.1_g000006 Rmu_sc0034686.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303480 Rroxscaffold_4G00303520
rosa_rugosa	Rorug01G0221700 Rorug01G0221800 Rorug01G0222300
rosa_samantha	Rh1AG235800 Rh1AG236300 Rh1BG206200
rosa_wichuraiana	Rw1G020520 Rw1G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	159, 172
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	125, 201
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	123
BccI	CCATC	1 cut(s)	276
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	2 cut(s)	127, 203
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	127, 203
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	33, 164
BmrFI	CCNGG	2 cut(s)	127, 203
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 172
BseBI	CCWGG	2 cut(s)	127, 203
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	159, 172
BseRI	GAGGAG	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	159, 172
BsmI	GAATGC	2 cut(s)	112, 257
BsnI	GGCC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	93, 175
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	33, 164
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	93, 175
Bst2UI	CCWGG	2 cut(s)	127, 203
Bst4CI	ACNGT	2 cut(s)	149, 232
BstAPI	GCANNNNNTGC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	96, 178
BstMBI	GATC	2 cut(s)	93, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 189, 203, 216
BstNI	CCWGG	2 cut(s)	127, 203
BstSCI	CCNGG	2 cut(s)	125, 201
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	125
BtsI	GCAGTG	2 cut(s)	61, 268
BtsIMutI	CAGTG	2 cut(s)	61, 268
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	172, 254
CviJI	RGCY	5 cut(s)	47, 79, 125, 279, 286
CviKI_1	RGCY	5 cut(s)	47, 79, 125, 279, 286
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	2 cut(s)	95, 177
DpnII	GATC	2 cut(s)	93, 175
EcoRII	CCWGG	2 cut(s)	125, 201
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	2 cut(s)	175, 257
FaiI	YATR	6 cut(s)	29, 168, 173, 255, 275, 342
FatI	CATG	2 cut(s)	171, 253
FauI	CCCGC	1 cut(s)	302
GlaI	GCGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	175, 257
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	19, 336
Hpy188III	TCNNGA	2 cut(s)	97, 289
Hpy8I	GTNNAC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	149, 232
HpyCH4V	TGCA	6 cut(s)	59, 159, 183, 249, 257, 273
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 189, 203, 216
Hsp92II	CATG	2 cut(s)	175, 257
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	93, 175
LpnPI	CCDG	8 cut(s)	45, 48, 106, 112, 139, 145, 188, 215
MalI	GATC	2 cut(s)	95, 177
MboI	GATC	2 cut(s)	93, 175
MflI	RGATCY	1 cut(s)	175
MnlI	CCTC	2 cut(s)	37, 214
Mph1103I	ATGCAT	1 cut(s)	259
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	127, 203
Mva1269I	GAATGC	2 cut(s)	112, 257
MvaI	CCWGG	2 cut(s)	127, 203
MwoI	GCNNNNNNNGC	4 cut(s)	122, 189, 203, 216
NdeII	GATC	2 cut(s)	93, 175
NlaIII	CATG	2 cut(s)	175, 257
NlaIV	GGNNCC	2 cut(s)	33, 164
NsiI	ATGCAT	1 cut(s)	259
PctI	GAATGC	2 cut(s)	112, 257
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	125, 201
PspGI	CCWGG	2 cut(s)	125, 201
PspN4I	GGNNCC	2 cut(s)	33, 164
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
Sau3AI	GATC	2 cut(s)	93, 175
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	127, 203
SetI	ASST	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	125, 201
TaaI	ACNGT	2 cut(s)	149, 232
TaqI	TCGA	1 cut(s)	68
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	2 cut(s)	61, 275
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	61, 275
Van91I	CCANNNNNTGG	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.