Rorug01G0221700

Spinocerebellar ataxia type 10 protein domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
31809975 .. 31820676
10702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0221700.1

Sequence Viewer

Length: 3813 bp
ATGGCTCAAGAAAGCTCCTCTTCCAATAGTGGTTCTCCTCATTATGATGGATATTGTAGGTATCATGTGTTCTTGAGTTTCAGAGGCGAAGACACGCGTAAGACTTTCACCGACCACCTCTACACCGCCTTTAAGGATCAAGGCTTTCGTACTTTCCGAGATGACGATGAACTTGAGAGAGGAGAAGATATTAATCCGGGGATTGAGAAAGCCATTCAACAGTCAAGAAGTTCTGTTATTGTGTTCTCAAATGATTACGCTTCTTCAAGCTGGTGCCTTGATGAGCTTTTGATGATCCTTCAACGCAGGAGGAGCTCCGATCATGTCGTTTTACCGGTTTTCTACAATGTGGATCCATCCCAAGTAAGGAAGCAGACGGGAAGTTTTGAGGAGGCTTTTGCCAGACACCAAAAGACTCAACCGTCGGACAAGGTGAAAGAATGGAGGGACGCACTAACAAAAGTTGCAAATCTTGGAGGGATGGTCTTACGGAACCAAGATGATGGGTACGAGTCAAAGTTTATTAAAACAATTGTTAAAGAGATAGGTGACAAGCTTAGTCGTACACCGTTAAGTGTTGGCTTCAACTTGATTGGAATCCATTCTCGATCCAACAAAATTAATCAATGGATACAAGATGGATCAGATGATGTTGGCATACATGTAATTTTTGGGATGTCTGGAATAGGGAAGACAACAGTTGCAAAACATGTCTATAATTCAAACTTCAGAAGATTCGAAGGAAGCAGCTTCATTGAAAATATTAGAGAAACCTCAGAACAAATCAATGGCCTAGTTAAAATACAAAAACAGCTCCTTTATGACATTTTGAATGGAAGAGAAGTGAAAATACGAAATGCTAGCGAGGGGAAAATTAAGATTGAAGATGGCATAAGCTGTAAAAGAGTTCTTCTTGTCCTCGATGATGTGGATCACATGGACCAATTTGATGCAGTACTTACGATGCAAGATCGATTCTATCCAGGAAGTAAAATCATCATAACAACTAGGCGTGCAAGGCTATTAAAGGCTCAAGGAGTTACTAAGGTGCATTATGTTCGAGCTCTAAATGAGAGTGAATCATTGAAGCTCTTCAGTTTGCATGCTTTTCGACAAGATCATCCGATTGAAGGTTATGTGGAACAGACTGAAAAGTTTGTACGCCACTGTGCCGGCCTTCCATTAGCTCTTCGAGTTTTGGGCTCTTCTCTATTCAGGGAAAATATAGATGTATGGGAGAGTGCACTAAGAAAATTGGAAGCTATTCCAAATAGTGAAATCATGGAGAAACTTAGAATGAGTTACGATGTACTGGATAAGCATGACCAGGAAGTGTTCCTCCACATTGCTTGTTTCTTTATTGGAAATGATAAAGATTACACTGTTGGAATACTAGATGGATGTGAGTTGTACACTACTATTGGCATTATAAATCTCATAGACAGATGCTTAGTAGCAATTGGCCCCAATAACAAGGTGGTGATGCATGACATGATCCGTGATATGGGAAGAGGAATTATTCGCCTAGCATCGGAGGAGCCTCGTAAACGTAGTAGATTATGGCATCACACAGACTCTATCAAAGTATTGAAAGAAAAGAATGGTACAAAAAAAATTCAAGGTCTTGAATTAAACATGCAAAGGCAACTTGGAGTCACTACTCCTTCAATATATTTGAATGAGATCGTCTTGGAAACCAATGCATTTGCAAGGATGCACAAACTAAGACTACTCCGGCTTAGTCATGTAAAACTCACTGGCTGCTACGAAGAAATTCCTACAGGATTGAGAATGTTATGTTGGATTGCATTTCCTCTGGATTCTATACCAATTGATTTTCATCTGGAGAACCTAGTTGTTCTGGAAATGCAGTATAGCAGCTTGAGACAAATCCTGAACGGAACAAAGTGTTTCCCATCCTTGAAGATCCTTGATCTCAGCCATTCTCATGGCCTTATTGCAACTGTTGACTTCTCTCTTTGTCCCAATCTAGAGAAACTGATTCTTATAGATTGTGAAGGCTTGATTGATGTCCATGAATCCATTGGAAACCTAGACAGACTTGTTTATTTGAATATGAAAGACTGCAAAAGTCTTAGGAGGCTACCAAAGACCATTGGTATGCTAAAGCTACTTGACACACTTATTATATCCGGTTGCTCAAATCTTGATAACTCTTCAATAGAGGTAATTAGGAGCATGGAGTCTCTGAAAGTGCTTGAATTGGATAGAATTCCAATGAGTCAGTTATTCACTCCCCACAGGGAGGTCAAATCAGGGACTTATTTACCATGCTCTTTACTATCTTTAAGTCTCAGTGGGTGCAATCTTTCTGATGATGCTTTTCCTGTGGATTTTTCTAGCCTATCCTTATTGAGGAGTTTAAATCTAAGTGAGAATCCAATTTCTGGCCTACCAAATTGCATCAAGGGTATGACAAGCATAGATGAGCTCTCTTTTTCAAATTGTTTGAGGCTTGAATCCCTTGTAGAGCTACCAAAAGTACGCAACGAGTTGAATGTGTCAGGTTGCGAAGCATTGGTAAAAATAACATATCAGTCAAATTCGTACGCCCAATTTCCACGCCGAAGTGGTAAGAATCACAGCCTATGTGAGTGGGAATACGAATACAAGTTAGAACCTATTGGAAGAGTTGATGTAGAAATGCTCAACCTTTTGGGCCTGAGCAAATTGGACTTCGAATTTATGCCAAATGTTCGGATATGCAAACCATATCAAGGTTACGACGTACTCCATCAGGGCGGTATCCAGGGACTGCATGAGTATGATTGTACAGACTCATATATTCGAGGAAATGCAAGAAAGCTAGATATGTTCAGCACATTTCTGCCTGGAAATGCGGTTCCAGGCCAATTCAGCTATAGAACCAAAGGCTCCTCCTCAATATCATTAACCTTGCCTTTGCCTTCACTTCCCGAGATCAGAATCCGAGGCTTTAACATCTTCATTGTCTATGCAGTTTCTGATAACGACGATGAAAGATATTCTTCTAGTAGTGACCAGGGTTCAATAACTATCAAAATCATAAATGAGAGCAAAGACGACAACTGGCATTATGGCCCAATATATCACGGTATTCCAGGTAAGGGAGAAGACATGATATGGTTAACCCATTGGAATATGAAGAATCAAGTAAAAGGTGGGGATCAAATGGCTGTTTCACTCTCGGTAAATCATGCAAGGTTTCGGTATCAGGTAAAGGAGTGGGGGATCCAGGTTGTACAGGAAAAGCAAGGAGATAAGACGTGTACCGACCACTACACCACAAATCCCATTTCTTTTCCATGTGCCACTGGTGGAGATTTGTTAACATCTGATGAGCCGTTGAGGGGAACATACTTGCTGTCATGTGAACCTCATTCAACGGTAGATAAAGATAAAAAAGAAGATGATGAAGAAGAGGCAGTGGGTGATCCTATTCCTGCATCAGCAATGGGGGATGGCAGCAACAACAGCGATCGGGGTCTCAGAAAGTGGAAGGTGCTCATCATTGCTGCTATCATCCTTGCTGCTGCCATCAGCGCTGCTCATCGTTTTGAGGAATCTGATCTAGACACAAATCTAGCTGAAACTGTCACTAATGCAGACAATGAAGAAGAACAACGGGATGAAGATGACAAGCTTGCAACAGCGACCGATACTGACAGCAGTACCAACCGTGCGCGGGATCCCAGAAAGTGGAAGGTGCTCATCATTGCTGCTGTCATATTAATTCTCTGTTTATCTGTTCGCTGGTTCTTCTTTTTCTCCGCCAGAGACAGATACATGGAGTCCATTTTGGTTCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1270

Amino Acids

143.82

Weight (kDa)

6.01

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 192 3.5e-54 TIR domain
TIR_2 PF13676 23 - 120 3.4e-16 TIR domain
NB-ARC PF00931 204 - 372 8.8e-20 NB-ARC domain
WHD_ROQ1 PF23282 440 - 510 8.5e-18 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1430
AasI GACNNNNNNGTC 1 cut(s) 421
AccB1I GGYRCC 1 cut(s) 273
AccB7I CCANNNNNTGG 2 cut(s) 2408, 3699
AccII CGCG 2 cut(s) 97, 3685
AciI CCGC 5 cut(s) 126, 2763, 2861, 3685, 3771
AcsI RAATTY 5 cut(s) 1614, 1773, 2232, 2563, 2702
AcuI CTGAAG 2 cut(s) 712, 1078
AfeI AGCGCT 1 cut(s) 3544
AflIII ACRYGT 4 cut(s) 95, 661, 709, 3266
AgeI ACCGGT 1 cut(s) 334
AjiI CACGTC 1 cut(s) 3267
AjnI CCWGG 8 cut(s) 982, 1326, 2769, 2851, 2866, 3021, 3100, 3234
AjuI GAANNNNNNNTTGG 2 cut(s) 1783, 1815
AloI GAACNNNNNNTCC 2 cut(s) 2847, 2879
Alw21I GWGCWC 6 cut(s) 317, 1066, 1246, 2454, 3507, 3711
Alw26I GTCTC 5 cut(s) 1879, 2211, 2318, 3491, 3771
Alw44I GTGCAC 1 cut(s) 1242
AlwNI CAGNNNCTG 2 cut(s) 2776, 2984
Ama87I CYCGRG 1 cut(s) 2936
Aor51HI AGCGCT 1 cut(s) 3544
AoxI GGCC 8 cut(s) 790, 1174, 1462, 1951, 2410, 2680, 2869, 3079
ApaLI GTGCAC 1 cut(s) 1242
ApeKI GCWGC 9 cut(s) 747, 1761, 1878, 3465, 3515, 3530, 3533, 3545, 3719
ApoI RAATTY 5 cut(s) 1614, 1773, 2232, 2563, 2702
AseI ATTAAT 3 cut(s) 192, 621, 3731
AsiGI ACCGGT 1 cut(s) 334
Asp700I GAANNNNTTC 4 cut(s) 601, 1091, 1263, 1773
AspLEI GCGC 2 cut(s) 3545, 3685
AspS9I GGNCC 4 cut(s) 940, 1463, 2680, 3080
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 5 cut(s) 100, 445, 560, 1492, 3443
AsuII TTCGAA 2 cut(s) 738, 2700
AsuNHI GCTAGC 1 cut(s) 860
AvaI CYCGRG 1 cut(s) 2936
AvaII GGWCC 1 cut(s) 940
BaeGI GKGCMC 1 cut(s) 1246
BaeI ACNNNNGTAYC 2 cut(s) 3655, 3688
BamHI GGATCC 3 cut(s) 352, 3231, 3688
BanI GGYRCC 1 cut(s) 273
BanII GRGCYC 4 cut(s) 317, 1066, 1205, 2454
BarI GAAGNNNNNNTAC 2 cut(s) 834, 866
BbsI GAAGAC 3 cut(s) 96, 698, 3120
Bbv12I GWGCWC 6 cut(s) 317, 1066, 1246, 2454, 3507, 3711
BbvI GCAGC 9 cut(s) 759, 1748, 1890, 3477, 3502, 3517, 3520, 3532, 3706
BceAI ACGGC 1 cut(s) 3328
BcgI CGANNNNNNTGC 4 cut(s) 1040, 1074, 1091, 1125
BciT130I CCWGG 8 cut(s) 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
BciVI GTATCC 2 cut(s) 624, 2777
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 5 cut(s) 1879, 2211, 2318, 3491, 3771
BfmI CTRYAG 2 cut(s) 1779, 2881
BfoI RGCGCY 1 cut(s) 3546
BfuI GTATCC 2 cut(s) 624, 2777
BisI GCNGC 9 cut(s) 748, 1762, 1879, 3466, 3516, 3531, 3534, 3546, 3720
BlsI GCNGC 9 cut(s) 749, 1763, 1880, 3467, 3517, 3532, 3535, 3547, 3721
BmcAI AGTACT 1 cut(s) 957
Bme1390I CCNGG 9 cut(s) 198, 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 1 cut(s) 2936
BmgBI CACGTC 1 cut(s) 3267
BmgT120I GGNCC 4 cut(s) 940, 1463, 2680, 3080
BmrFI CCNGG 9 cut(s) 198, 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
BmtI GCTAGC 1 cut(s) 864
BpiI GAAGAC 3 cut(s) 96, 698, 3120
BpmI CTGGAG 1 cut(s) 1865
Bpu10I CCTNAGC 1 cut(s) 2684
Bpu14I TTCGAA 2 cut(s) 738, 2700
BpuEI CTTGAG 4 cut(s) 94, 194, 1017, 1903
BpuMI CCSGG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 973
BsaBI GATNNNNATC 5 cut(s) 192, 596, 930, 1839, 2945
BsaI GGTCTC 1 cut(s) 3491
BsaJI CCNNGG 4 cut(s) 197, 2770, 2950, 3022
BsaWI WCCGGW 2 cut(s) 334, 2153
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bse118I RCCGGY 2 cut(s) 334, 1172
Bse1I ACTGG 4 cut(s) 1317, 1762, 3074, 3319
Bse3DI GCAATG 4 cut(s) 1344, 3459, 3510, 3714
Bse8I GATNNNNATC 5 cut(s) 192, 596, 930, 1839, 2945
BseBI CCWGG 8 cut(s) 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
BseCI ATCGAT 1 cut(s) 973
BseDI CCNNGG 4 cut(s) 197, 2770, 2950, 3022
BseJI GATNNNNATC 5 cut(s) 192, 596, 930, 1839, 2945
BseMI GCAATG 4 cut(s) 1344, 3459, 3510, 3714
BseMII CTCAG 5 cut(s) 789, 1951, 2329, 2675, 3502
BseNI ACTGG 4 cut(s) 1317, 1762, 3074, 3319
BseRI GAGGAG 9 cut(s) 7, 27, 195, 325, 404, 1550, 2392, 2887, 2890
BseSI GKGCMC 1 cut(s) 1246
BseXI GCAGC 9 cut(s) 759, 1748, 1890, 3477, 3502, 3517, 3520, 3532, 3706
Bsh1236I CGCG 2 cut(s) 97, 3685
Bsh1285I CGRYCG 2 cut(s) 3481, 3657
BshFI GGCC 8 cut(s) 792, 1176, 1464, 1953, 2412, 2682, 2871, 3081
BshNI GGYRCC 1 cut(s) 273
BshTI ACCGGT 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 973
BsiEI CGRYCG 2 cut(s) 3481, 3657
BsiHKAI GWGCWC 6 cut(s) 317, 1066, 1246, 2454, 3507, 3711
BsiHKCI CYCGRG 1 cut(s) 2936
BsiSI CCGG 5 cut(s) 197, 335, 1173, 1735, 2154
BsiWI CGTACG 1 cut(s) 2568
BslFI GGGAC 4 cut(s) 461, 1968, 2293, 2787
BsmAI GTCTC 5 cut(s) 1879, 2211, 2318, 3491, 3771
BsmFI GGGAC 4 cut(s) 461, 1968, 2293, 2787
BsnI GGCC 8 cut(s) 792, 1176, 1464, 1953, 2412, 2682, 2871, 3081
Bso31I GGTCTC 1 cut(s) 3491
BsoBI CYCGRG 1 cut(s) 2936
Bsp119I TTCGAA 2 cut(s) 738, 2700
Bsp1286I GDGCHC 7 cut(s) 317, 1066, 1205, 1246, 2454, 3507, 3711
Bsp1407I TGTACA 3 cut(s) 1410, 2792, 3241
BspACI CCGC 5 cut(s) 126, 2763, 2861, 3685, 3771
BspANI GGCC 8 cut(s) 792, 1176, 1464, 1953, 2412, 2682, 2871, 3081
BspCNI CTCAG 5 cut(s) 788, 1950, 2328, 2676, 3501
BspDI ATCGAT 1 cut(s) 973
BspFNI CGCG 2 cut(s) 97, 3685
BspOI GCTAGC 1 cut(s) 864
BspQI GCTCTTC 3 cut(s) 1097, 1194, 1210
BspT104I TTCGAA 2 cut(s) 738, 2700
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 3491
BsrDI GCAATG 4 cut(s) 1344, 3459, 3510, 3714
BsrFI RCCGGY 2 cut(s) 334, 1172
BsrGI TGTACA 3 cut(s) 1410, 2792, 3241
BsrI ACTGG 4 cut(s) 1317, 1762, 3074, 3319
BssAI RCCGGY 2 cut(s) 334, 1172
BssECI CCNNGG 4 cut(s) 197, 2770, 2950, 3022
Bst2UI CCWGG 8 cut(s) 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
Bst6I CTCTTC 9 cut(s) 25, 832, 1097, 1194, 1210, 1504, 2182, 2644, 3414
BstAUI TGTACA 3 cut(s) 1410, 2792, 3241
BstBI TTCGAA 2 cut(s) 738, 2700
BstC8I GCNNGC 5 cut(s) 862, 1014, 1104, 1174, 3645
BstENI CCTNNNNNAGG 1 cut(s) 2374
BstFNI CGCG 2 cut(s) 97, 3685
BstH2I RGCGCY 1 cut(s) 3546
BstHHI GCGC 2 cut(s) 3545, 3685
BstMAI GTCTC 5 cut(s) 1879, 2211, 2318, 3491, 3771
BstMCI CGRYCG 2 cut(s) 3481, 3657
BstMWI GCNNNNNNNGC 5 cut(s) 312, 1018, 2877, 3474, 3542
BstNI CCWGG 8 cut(s) 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
BstNSI RCATGY 4 cut(s) 665, 713, 1106, 1639
BstSCI CCNGG 9 cut(s) 196, 982, 1326, 2769, 2851, 2866, 3021, 3100, 3234
BstSFI CTRYAG 2 cut(s) 1779, 2881
BstSLI GKGCMC 1 cut(s) 1246
BstUI CGCG 2 cut(s) 97, 3685
BstV1I GCAGC 9 cut(s) 759, 1748, 1890, 3477, 3502, 3517, 3520, 3532, 3706
BstV2I GAAGAC 3 cut(s) 96, 698, 3120
BstX2I RGATCY 4 cut(s) 352, 1926, 3231, 3688
BstXI CCANNNNNNTGG 2 cut(s) 503, 1949
BstYI RGATCY 4 cut(s) 352, 1926, 3231, 3688
Bsu15I ATCGAT 1 cut(s) 973
BsuI GTATCC 2 cut(s) 624, 2777
BsuRI GGCC 8 cut(s) 792, 1176, 1464, 1953, 2412, 2682, 2871, 3081
BsuTUI ATCGAT 1 cut(s) 973
BtrI CACGTC 1 cut(s) 3267
BtsI GCAGTG 1 cut(s) 3432
BtsIMutI CAGTG 6 cut(s) 1165, 1380, 1755, 2323, 3312, 3432
Cac8I GCNNGC 5 cut(s) 862, 1014, 1104, 1174, 3645
CaiI CAGNNNCTG 2 cut(s) 2776, 2984
CfoI GCGC 2 cut(s) 3545, 3685
Cfr10I RCCGGY 2 cut(s) 334, 1172
Cfr13I GGNCC 4 cut(s) 940, 1463, 2680, 3080
ClaI ATCGAT 1 cut(s) 973
CseI GACGC 1 cut(s) 458
CspAI ACCGGT 1 cut(s) 334
CspCI CAANNNNNGTGG 2 cut(s) 1331, 1366
DraI TTTAAA 1 cut(s) 2385
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 9 cut(s) 25, 832, 1097, 1194, 1210, 1504, 2182, 2644, 3414
EarI CTCTTC 9 cut(s) 25, 832, 1097, 1194, 1210, 1504, 2182, 2644, 3414
EciI GGCGGA 1 cut(s) 3760
Ecl136II GAGCTC 3 cut(s) 315, 1064, 2452
Eco24I GRGCYC 4 cut(s) 317, 1066, 1205, 2454
Eco31I GGTCTC 1 cut(s) 3491
Eco47I GGWCC 1 cut(s) 940
Eco47III AGCGCT 1 cut(s) 3544
Eco53kI GAGCTC 3 cut(s) 315, 1064, 2452
Eco57I CTGAAG 2 cut(s) 712, 1078
Eco88I CYCGRG 1 cut(s) 2936
EcoICRI GAGCTC 3 cut(s) 315, 1064, 2452
EcoNI CCTNNNNNAGG 1 cut(s) 2374
EcoRI GAATTC 1 cut(s) 2232
EcoRII CCWGG 8 cut(s) 982, 1326, 2769, 2851, 2866, 3021, 3100, 3234
EcoT22I ATGCAT 2 cut(s) 1488, 1705
EcoT38I GRGCYC 4 cut(s) 317, 1066, 1205, 2454
FalI AAGNNNNNCTT 3 cut(s) 36, 2992, 3024
FaqI GGGAC 4 cut(s) 461, 1968, 2293, 2787
FauI CCCGC 1 cut(s) 3678
Fnu4HI GCNGC 9 cut(s) 748, 1762, 1879, 3466, 3516, 3531, 3534, 3546, 3720
FriOI GRGCYC 4 cut(s) 317, 1066, 1205, 2454
Fsp4HI GCNGC 9 cut(s) 748, 1762, 1879, 3466, 3516, 3531, 3534, 3546, 3720
GlaI GCGC 2 cut(s) 3544, 3684
GluI GCNGC 9 cut(s) 748, 1762, 1879, 3466, 3516, 3531, 3534, 3546, 3720
GsuI CTGGAG 1 cut(s) 1865
HaeII RGCGCY 1 cut(s) 3546
HaeIII GGCC 8 cut(s) 792, 1176, 1464, 1953, 2412, 2682, 2871, 3081
HapII CCGG 5 cut(s) 197, 335, 1173, 1735, 2154
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 3545, 3685
Hin6I GCGC 2 cut(s) 3543, 3683
HinP1I GCGC 2 cut(s) 3543, 3683
HincII GTYRAC 3 cut(s) 1969, 3129, 3330
HindII GTYRAC 3 cut(s) 1969, 3129, 3330
HindIII AAGCTT 2 cut(s) 554, 3641
HpaI GTTAAC 2 cut(s) 3129, 3330
HpaII CCGG 5 cut(s) 197, 335, 1173, 1735, 2154
HphI GGTGA 5 cut(s) 100, 445, 560, 1492, 3443
Hpy166II GTNNAC 9 cut(s) 566, 1244, 1413, 1547, 1969, 3129, 3270, 3330, 3374
Hpy8I GTNNAC 9 cut(s) 566, 1244, 1413, 1547, 1969, 3129, 3270, 3330, 3374
Hpy99I CGWCG 3 cut(s) 427, 2750, 2996
HpyAV CCTTC 9 cut(s) 308, 734, 1124, 1187, 1674, 2012, 2937, 3493, 3697
HpyCH4IV ACGT 3 cut(s) 1549, 2748, 3266
HpyF10VI GCNNNNNNNGC 5 cut(s) 312, 1018, 2877, 3474, 3542
HpySE526I ACGT 3 cut(s) 1549, 2748, 3266
HspAI GCGC 2 cut(s) 3543, 3683
KroI GCCGGC 1 cut(s) 1172
KroNI GCCGGC 1 cut(s) 1174
KspAI GTTAAC 2 cut(s) 3129, 3330
LguI GCTCTTC 3 cut(s) 1097, 1194, 1210
LmnI GCTCC 7 cut(s) 20, 312, 320, 819, 1537, 2196, 2900
Lsp1109I GCAGC 9 cut(s) 759, 1748, 1890, 3477, 3502, 3517, 3520, 3532, 3706
MaeII ACGT 3 cut(s) 1549, 2748, 3266
MaeIII GTNAC 7 cut(s) 548, 1039, 1301, 1654, 2741, 3017, 3595
MfeI CAATTG 3 cut(s) 531, 1458, 1830
MflI RGATCY 4 cut(s) 352, 1926, 3231, 3688
MhlI GDGCHC 7 cut(s) 317, 1066, 1205, 1246, 2454, 3507, 3711
MluI ACGCGT 1 cut(s) 95
MlyI GAGTC 8 cut(s) 409, 521, 1568, 1662, 2213, 2251, 2792, 3800
MmeI TCCRAC 4 cut(s) 405, 636, 1366, 1781
Mph1103I ATGCAT 2 cut(s) 1488, 1705
MroNI GCCGGC 1 cut(s) 1172
MroXI GAANNNNTTC 4 cut(s) 601, 1091, 1263, 1773
MslI CAYNNNNRTG 4 cut(s) 45, 1947, 2120, 2784
MspI CCGG 5 cut(s) 197, 335, 1173, 1735, 2154
MspR9I CCNGG 9 cut(s) 198, 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
MunI CAATTG 3 cut(s) 531, 1458, 1830
MvaI CCWGG 8 cut(s) 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
MvnI CGCG 2 cut(s) 97, 3685
MwoI GCNNNNNNNGC 5 cut(s) 312, 1018, 2877, 3474, 3542
NaeI GCCGGC 1 cut(s) 1174
NciI CCSGG 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 1172
NheI GCTAGC 1 cut(s) 860
NmuCI GTSAC 4 cut(s) 548, 1654, 3017, 3595
NsiI ATGCAT 2 cut(s) 1488, 1705
NspI RCATGY 4 cut(s) 665, 713, 1106, 1639
NspV TTCGAA 2 cut(s) 738, 2700
PaeI GCATGC 1 cut(s) 1106
PciI ACATGT 2 cut(s) 661, 709
PciSI GCTCTTC 3 cut(s) 1097, 1194, 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PdiI GCCGGC 1 cut(s) 1174
PdmI GAANNNNTTC 4 cut(s) 601, 1091, 1263, 1773
Pfl23II CGTACG 1 cut(s) 2568
PflMI CCANNNNNTGG 2 cut(s) 2408, 3699
PfoI TCCNGGA 1 cut(s) 982
PinAI ACCGGT 1 cut(s) 334
PkrI GCNGC 9 cut(s) 749, 1763, 1880, 3467, 3517, 3532, 3535, 3547, 3721
Ple19I CGATCG 1 cut(s) 3481
PleI GAGTC 8 cut(s) 409, 520, 1568, 1661, 2212, 2250, 2792, 3799
PpsI GAGTC 8 cut(s) 409, 520, 1568, 1661, 2212, 2250, 2792, 3799
PscI ACATGT 2 cut(s) 661, 709
PshBI ATTAAT 3 cut(s) 192, 621, 3731
PsiI TTATAA 1 cut(s) 1430
Psp124BI GAGCTC 3 cut(s) 317, 1066, 2454
Psp6I CCWGG 8 cut(s) 982, 1326, 2769, 2851, 2866, 3021, 3100, 3234
PspGI CCWGG 8 cut(s) 982, 1326, 2769, 2851, 2866, 3021, 3100, 3234
PspLI CGTACG 1 cut(s) 2568
PspPI GGNCC 4 cut(s) 940, 1463, 2680, 3080
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstNI CAGNNNCTG 2 cut(s) 2776, 2984
PsuI RGATCY 4 cut(s) 352, 1926, 3231, 3688
PvuI CGATCG 1 cut(s) 3481
RseI CAYNNNNRTG 4 cut(s) 45, 1947, 2120, 2784
SacI GAGCTC 3 cut(s) 317, 1066, 2454
SapI GCTCTTC 3 cut(s) 1097, 1194, 1210
SatI GCNGC 9 cut(s) 748, 1762, 1879, 3466, 3516, 3531, 3534, 3546, 3720
Sau96I GGNCC 4 cut(s) 940, 1463, 2680, 3080
ScaI AGTACT 1 cut(s) 957
SchI GAGTC 8 cut(s) 409, 521, 1568, 1662, 2213, 2251, 2792, 3800
ScrFI CCNGG 9 cut(s) 198, 984, 1328, 2771, 2853, 2868, 3023, 3102, 3236
SduI GDGCHC 7 cut(s) 317, 1066, 1205, 1246, 2454, 3507, 3711
SfcI CTRYAG 2 cut(s) 1779, 2881
SfuI TTCGAA 2 cut(s) 738, 2700
SinI GGWCC 1 cut(s) 940
SmiMI CAYNNNNRTG 4 cut(s) 45, 1947, 2120, 2784
SmlI CTYRAG 5 cut(s) 6, 73, 173, 1032, 1882
SmoI CTYRAG 5 cut(s) 6, 73, 173, 1032, 1882
SphI GCATGC 1 cut(s) 1106
SsiI CCGC 5 cut(s) 126, 2763, 2861, 3685, 3771
SspI AATATT 1 cut(s) 763
SstI GAGCTC 3 cut(s) 317, 1066, 2454
StyD4I CCNGG 9 cut(s) 196, 982, 1326, 2769, 2851, 2866, 3021, 3100, 3234
TaiI ACGT 3 cut(s) 1552, 2751, 3269
TaqI TCGA 9 cut(s) 607, 738, 921, 973, 1060, 1111, 1192, 2700, 2809
TaqII GACCGA 1 cut(s) 3671
TatI WGTACW 5 cut(s) 955, 1309, 1410, 2792, 3241
TscAI CASTG 6 cut(s) 1172, 1387, 1762, 2323, 3319, 3432
TseFI GTSAC 4 cut(s) 548, 1654, 3017, 3595
TseI GCWGC 9 cut(s) 747, 1761, 1878, 3465, 3515, 3530, 3533, 3545, 3719
Tsp45I GTSAC 4 cut(s) 548, 1654, 3017, 3595
TspGWI ACGGA 3 cut(s) 505, 1487, 1914
TspRI CASTG 6 cut(s) 1172, 1387, 1762, 2323, 3319, 3432
Van91I CCANNNNNTGG 2 cut(s) 2408, 3699
VneI GTGCAC 1 cut(s) 1242
VpaK11BI GGWCC 1 cut(s) 940
VspI ATTAAT 3 cut(s) 192, 621, 3731
XagI CCTNNNNNAGG 1 cut(s) 2374
XapI RAATTY 5 cut(s) 1614, 1773, 2232, 2563, 2702
XbaI TCTAGA 2 cut(s) 1990, 3571
XceI RCATGY 4 cut(s) 665, 713, 1106, 1639
XcmI CCANNNNNNNNNTGG 2 cut(s) 1474, 2042
XmnI GAANNNNTTC 4 cut(s) 601, 1091, 1263, 1773
ZrmI AGTACT 1 cut(s) 957
Zsp2I ATGCAT 2 cut(s) 1488, 1705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.