FvH4_7g12770

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003909
Physical Location & Seq
Reverse (-)
11578452 .. 11582219
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12770.t1

Sequence Viewer

Length: 1473 bp
ATGGATAATACCGCACTGCCAGAGTGCTCTGTACCCGAAGATGTTATCCAGGCGCTTTTGAGTGTGTCAAACTCATCTAACCTTGTAGAGTCCATGGAAGATTTAATACAAGTTTGTAAAACGGCTGATGGTCGTGAAGACCTTGCCGCTAAGAATGTTCTTCCGACAGTTATCCAGCTTGTTCAATCTCTCTTGTACCCCTCTGATCACTACCTTCTGACATTGTCTTTAAGGCTTCTAAGAAACTTGTGTGCTGGGGAGGTGGCGAATCAGAACTCGTTTGTTGAACAAAATGGAGTTGCAATCGTATCCAATATTTTGAGTTCTGCAATTTCTCTGGAGCCGGATTTCTGGATTATTTGTGTGGGATTGCAAGTTCTAGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAAATTTGTTGCTCTTGCACGAGTGCGTAGCAAGAAGACTTGTGGTCCGCTGTGTATGATTATCTCCACTTGTTGTGATGGAACCCCTGAACTGGTTGCACAGCTCTGTGGTGACTGTGGAGTAACTATTTTGAAAGAGATTGTTAAGACTGCTGCTGCAGTTGATTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATCTGTTTAGTGGAACCTTACTTCCGGCCACTCTTCTTTAGTTTAGAACATGTTGGTGAGAATGCTGAAGACACAGAAGGTGGGCGAGAGTCTTTCTCGAAAGAGCAAGAATTTTTGTTGAAAAACGTATCAGAGATCTTGAATGAGTGTCTTAGCGAGATAACTGTTCCCAACGATTTTGCTTTGTGTGTTTTTGGAATATTCAAGAACTCCATCAAGGTTCTTAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACCGGCTCTATTGACATTGATGTCCTGGGATACTCGCTCACTATCTTGAGAGATACATGTGCCCAAGGGACACTAAGAGGATCTACAAAGGATACCATGGATGTTGTGGATGCTCTGATCTCCTATGGTCTCATTGAATTGCTGTTGTCTTTGCTTCGTGACCTTGAGCCGCCAGCAATAATAAAGAAATCTATCAACCAAGCCGAGAACCAAGAAGGATCCAGTTCTTCTACATTAAAACCATGTCCATATAAAGGCTTTCGGAGAGATATAGTTGCAGTTATCGGCAATTGTTTATATGGAAGGAAGATTGTGCAAGACGAGATCAGGAGAAAAGATGGGCTACTTCTGCTGTTGCAACAATGTGTAATAGATGATGACAACCCGTACTCAAGGGAGTGGGGTATTTGGTGTCAGAGGAACTTGTTGGATCGGAACCAAGAAAATCAACGGGCAGTGGCTGAATTGGAACTTAAGGGGTCTGTTGATGTGCCTGCCCTTGCTCGACTTGGCCTCCGAGTAGAGATGAACCTGGCAACTGGACGTCCAAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

491

Amino Acids

54.02

Weight (kDa)

4.91

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 388 - 484 9.2e-32 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 923
AatII GACGTC 1 cut(s) 1450
Acc36I ACCTGC 1 cut(s) 879
AciI CCGC 4 cut(s) 12, 147, 491, 1073
AclWI GGATC 4 cut(s) 991, 1116, 1129, 1341
AcoI YGGCCR 1 cut(s) 671
AcsI RAATTY 2 cut(s) 446, 755
AcuI CTGAAG 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 1447
AfaI GTAC 4 cut(s) 33, 197, 626, 1292
AfiI CCNNNNNNNGG 2 cut(s) 535, 1157
AflII CTTAAG 1 cut(s) 1376
AflIII ACRYGT 2 cut(s) 694, 959
AgsI TTSAA 8 cut(s) 185, 287, 577, 642, 766, 787, 850, 1040
AhdI GACNNNNNGTC 1 cut(s) 486
AjnI CCWGG 3 cut(s) 48, 927, 1434
AloI GAACNNNNNNTCC 4 cut(s) 360, 392, 651, 683
AluBI AGCT 4 cut(s) 178, 383, 547, 1456
AluI AGCT 4 cut(s) 178, 383, 547, 1456
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 1037
AlwI GGATC 4 cut(s) 991, 1116, 1129, 1341
AlwNI CAGNNNCTG 1 cut(s) 1364
AoxI GGCC 2 cut(s) 671, 1414
ApeKI GCWGC 5 cut(s) 389, 412, 427, 596, 599
ApoI RAATTY 2 cut(s) 446, 755
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 566, 713
AvaII GGWCC 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 967
BamHI GGATCC 1 cut(s) 1121
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 3 cut(s) 144, 485, 720
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 5 cut(s) 376, 424, 439, 583, 586
BccI CCATC 4 cut(s) 122, 515, 866, 1235
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 3 cut(s) 50, 929, 1436
BciVI GTATCC 3 cut(s) 319, 926, 988
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 1037
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 600
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 1376
BfuAI ACCTGC 1 cut(s) 879
BfuI GTATCC 3 cut(s) 319, 926, 988
BglII AGATCT 1 cut(s) 780
BisI GCNGC 7 cut(s) 147, 390, 413, 428, 597, 600, 1073
BlsI GCNGC 7 cut(s) 148, 391, 414, 429, 598, 601, 1074
Bme1390I CCNGG 3 cut(s) 50, 929, 1436
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 5 cut(s) 342, 526, 660, 1123, 1340
BmrFI CCNGG 3 cut(s) 50, 929, 1436
BmsI GCATC 1 cut(s) 1003
BpiI GAAGAC 3 cut(s) 144, 485, 720
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 2 cut(s) 359, 420
BpuEI CTTGAG 3 cut(s) 970, 1088, 1279
BsaHI GRCGYC 1 cut(s) 1447
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 4 cut(s) 93, 928, 967, 999
BsaXI ACNNNNNCTCC 2 cut(s) 1401, 1431
Bsc4I CCNNNNNNNGG 2 cut(s) 535, 1157
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 3 cut(s) 540, 1125, 1447
BseBI CCWGG 3 cut(s) 50, 929, 1436
BseDI CCNNGG 4 cut(s) 93, 928, 967, 999
BseGI GGATG 2 cut(s) 1009, 1018
BseLI CCNNNNNNNGG 2 cut(s) 535, 1157
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 3 cut(s) 540, 1125, 1447
BseSI GKGCMC 1 cut(s) 967
BseXI GCAGC 5 cut(s) 376, 424, 439, 583, 586
BseYI CCCAGC 1 cut(s) 254
BshFI GGCC 2 cut(s) 673, 1416
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 344, 670, 906
BslFI GGGAC 1 cut(s) 985
BslI CCNNNNNNNGG 2 cut(s) 535, 1157
BsmAI GTCTC 1 cut(s) 1037
BsmFI GGGAC 1 cut(s) 985
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 2 cut(s) 673, 1416
Bso31I GGTCTC 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 29, 967
Bsp143I GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
Bsp19I CCATGG 2 cut(s) 93, 999
BspACI CCGC 4 cut(s) 12, 147, 491, 1073
BspANI GGCC 2 cut(s) 673, 1416
BspCNI CTCAG 1 cut(s) 452
BspHI TCATGA 1 cut(s) 1469
BspLI GGNNCC 5 cut(s) 342, 526, 660, 1123, 1340
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 879
BspPI GGATC 4 cut(s) 991, 1116, 1129, 1341
BspTI CTTAAG 1 cut(s) 1376
BspTNI GGTCTC 1 cut(s) 1037
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 3 cut(s) 540, 1125, 1447
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 4 cut(s) 93, 928, 967, 999
BssMI GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
BssNI GRCGYC 1 cut(s) 1447
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 3 cut(s) 93, 967, 999
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 3 cut(s) 50, 929, 1436
Bst4CI ACNGT 3 cut(s) 169, 560, 811
Bst6I CTCTTC 2 cut(s) 440, 683
BstACI GRCGYC 1 cut(s) 1447
BstAFI CTTAAG 1 cut(s) 1376
BstC8I GCNNGC 3 cut(s) 417, 1077, 1398
BstDEI CTNAG 6 cut(s) 150, 239, 439, 797, 869, 977
BstDSI CCRYGG 2 cut(s) 93, 999
BstF5I GGATG 2 cut(s) 1009, 1018
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 7 cut(s) 208, 783, 986, 1023, 1124, 1230, 1336
BstMAI GTCTC 1 cut(s) 1037
BstMBI GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
BstMWI GCNNNNNNNGC 3 cut(s) 389, 395, 1252
BstNI CCWGG 3 cut(s) 50, 929, 1436
BstNSI RCATGY 3 cut(s) 419, 698, 963
BstSCI CCNGG 3 cut(s) 48, 927, 1434
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 967
BstV1I GCAGC 5 cut(s) 376, 424, 439, 583, 586
BstV2I GAAGAC 3 cut(s) 144, 485, 720
BstX2I RGATCY 3 cut(s) 780, 983, 1121
BstYI RGATCY 3 cut(s) 780, 983, 1121
BsuI GTATCC 3 cut(s) 319, 926, 988
BsuRI GGCC 2 cut(s) 673, 1416
BtgI CCRYGG 2 cut(s) 93, 999
BtsCI GGATG 2 cut(s) 1009, 1018
BtsI GCAGTG 2 cut(s) 14, 1365
BtsIMutI CAGTG 2 cut(s) 14, 1365
BveI ACCTGC 1 cut(s) 879
Cac8I GCNNGC 3 cut(s) 417, 1077, 1398
CaiI CAGNNNCTG 1 cut(s) 1364
CciI TCATGA 1 cut(s) 1469
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 4 cut(s) 32, 196, 625, 1291
CviAII CATG 7 cut(s) 94, 416, 695, 960, 1000, 1146, 1470
CviQI GTAC 4 cut(s) 32, 196, 625, 1291
DdeI CTNAG 6 cut(s) 150, 239, 439, 797, 869, 977
DpnI GATC 7 cut(s) 207, 782, 985, 1022, 1123, 1229, 1335
DpnII GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
DrdI GACNNNNNNGTC 1 cut(s) 923
DriI GACNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 1 cut(s) 923
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 2 cut(s) 440, 683
Eam1105I GACNNNNNGTC 1 cut(s) 486
EarI CTCTTC 2 cut(s) 440, 683
Eco130I CCWWGG 3 cut(s) 93, 967, 999
Eco31I GGTCTC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 732
EcoRII CCWGG 3 cut(s) 48, 927, 1434
EcoT14I CCWWGG 3 cut(s) 93, 967, 999
ErhI CCWWGG 3 cut(s) 93, 967, 999
FaeI CATG 7 cut(s) 97, 419, 698, 963, 1003, 1149, 1473
FaqI GGGAC 1 cut(s) 985
FatI CATG 7 cut(s) 93, 415, 694, 959, 999, 1145, 1469
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 7 cut(s) 147, 390, 413, 428, 597, 600, 1073
FokI GGATG 2 cut(s) 1016, 1025
Fsp4HI GCNGC 7 cut(s) 147, 390, 413, 428, 597, 600, 1073
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 54
GluI GCNGC 7 cut(s) 147, 390, 413, 428, 597, 600, 1073
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 359, 420
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 673, 1416
HapII CCGG 3 cut(s) 344, 670, 906
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 1447
Hin1II CATG 7 cut(s) 97, 419, 698, 963, 1003, 1149, 1473
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 1454
HinfI GANTC 4 cut(s) 89, 268, 645, 734
HpaII CCGG 3 cut(s) 344, 670, 906
HphI GGTGA 2 cut(s) 566, 713
HpyAV CCTTC 4 cut(s) 224, 716, 1112, 1200
HpyCH4III ACNGT 3 cut(s) 169, 560, 811
HpyCH4IV ACGT 2 cut(s) 771, 1447
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 395, 1252
HpyF3I CTNAG 6 cut(s) 150, 239, 439, 797, 869, 977
HpySE526I ACGT 2 cut(s) 771, 1447
Hsp92I GRCGYC 1 cut(s) 1447
Hsp92II CATG 7 cut(s) 97, 419, 698, 963, 1003, 1149, 1473
HspAI GCGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 5 cut(s) 376, 424, 439, 583, 586
LweI GCATC 1 cut(s) 1003
MaeI CTAG 1 cut(s) 380
MaeII ACGT 2 cut(s) 771, 1447
MaeIII GTNAC 3 cut(s) 554, 565, 1061
MalI GATC 7 cut(s) 207, 782, 985, 1022, 1123, 1229, 1335
MboI GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
MfeI CAATTG 1 cut(s) 1192
MflI RGATCY 3 cut(s) 780, 983, 1121
MhlI GDGCHC 2 cut(s) 29, 967
MluCI AATT 8 cut(s) 330, 420, 446, 629, 755, 1040, 1192, 1367
MlyI GAGTC 2 cut(s) 98, 743
MmeI TCCRAC 3 cut(s) 188, 926, 1311
MnlI CCTC 6 cut(s) 211, 253, 878, 974, 1314, 1427
MseI TTAA 6 cut(s) 104, 230, 588, 1139, 1377, 1461
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 493
MspCI CTTAAG 1 cut(s) 1376
MspI CCGG 3 cut(s) 344, 670, 906
MspR9I CCNGG 3 cut(s) 50, 929, 1436
MunI CAATTG 1 cut(s) 1192
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 3 cut(s) 50, 929, 1436
MwoI GCNNNNNNNGC 3 cut(s) 389, 395, 1252
NcoI CCATGG 2 cut(s) 93, 999
NdeII GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
NlaIII CATG 7 cut(s) 97, 419, 698, 963, 1003, 1149, 1473
NlaIV GGNNCC 5 cut(s) 342, 526, 660, 1123, 1340
NmeAIII GCCGAG 1 cut(s) 1132
NmuCI GTSAC 2 cut(s) 554, 1061
NspI RCATGY 3 cut(s) 419, 698, 963
PaeI GCATGC 1 cut(s) 419
PagI TCATGA 1 cut(s) 1469
PciI ACATGT 2 cut(s) 694, 959
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 2 cut(s) 268, 645
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 7 cut(s) 148, 391, 414, 429, 598, 601, 1074
PleI GAGTC 2 cut(s) 97, 742
PpsI GAGTC 2 cut(s) 97, 742
PscI ACATGT 2 cut(s) 694, 959
Psp6I CCWGG 3 cut(s) 48, 927, 1434
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 3 cut(s) 48, 927, 1434
PspN4I GGNNCC 5 cut(s) 342, 526, 660, 1123, 1340
PspPI GGNCC 1 cut(s) 488
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 1364
PsuI RGATCY 3 cut(s) 780, 983, 1121
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 4 cut(s) 33, 197, 626, 1292
RsaNI GTAC 4 cut(s) 32, 196, 625, 1291
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 6 cut(s) 104, 230, 588, 1139, 1377, 1461
SatI GCNGC 7 cut(s) 147, 390, 413, 428, 597, 600, 1073
Sau3AI GATC 7 cut(s) 205, 780, 983, 1020, 1121, 1227, 1333
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 2 cut(s) 98, 743
ScrFI CCNGG 3 cut(s) 50, 929, 1436
SduI GDGCHC 2 cut(s) 29, 967
SfaNI GCATC 1 cut(s) 1003
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 4 cut(s) 949, 1067, 1294, 1376
SmoI CTYRAG 4 cut(s) 949, 1067, 1294, 1376
SphI GCATGC 1 cut(s) 419
Sse9I AATT 8 cut(s) 330, 420, 446, 629, 755, 1040, 1192, 1367
SsiI CCGC 4 cut(s) 12, 147, 491, 1073
SspI AATATT 2 cut(s) 316, 846
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 3 cut(s) 48, 927, 1434
StyI CCWWGG 3 cut(s) 93, 967, 999
TaaI ACNGT 3 cut(s) 169, 560, 811
TaiI ACGT 2 cut(s) 774, 1450
TaqI TCGA 2 cut(s) 743, 1408
TasI AATT 8 cut(s) 330, 420, 446, 629, 755, 1040, 1192, 1367
TauI GCSGC 2 cut(s) 149, 1075
TfiI GAWTC 2 cut(s) 268, 645
Tru1I TTAA 6 cut(s) 104, 230, 588, 1139, 1377, 1461
Tru9I TTAA 6 cut(s) 104, 230, 588, 1139, 1377, 1461
TscAI CASTG 2 cut(s) 21, 1365
TseFI GTSAC 2 cut(s) 554, 1061
TseI GCWGC 5 cut(s) 389, 412, 427, 596, 599
Tsp45I GTSAC 2 cut(s) 554, 1061
TspDTI ATGAA 1 cut(s) 1445
TspRI CASTG 2 cut(s) 21, 1365
Tth111I GACNNNGTC 1 cut(s) 223
Vha464I CTTAAG 1 cut(s) 1376
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 2 cut(s) 446, 755
XceI RCATGY 3 cut(s) 419, 698, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 1006
XspI CTAG 1 cut(s) 380
ZraI GACGTC 1 cut(s) 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.